Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1671 203 3e-47 >seq1671 Length=4299 Score = 203 bits (224), Expect = 3e-47 Identities = 622/944 (66%), Gaps = 51/944 (5%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 ||| | |||||||| ||||| ||| |||| ||||||| | ||||| ||||| ||| Sbjct 2728 CAGATCGAGACGGGCGTGCCCTTCATGTTGTACAAGGACGCCTGCAACGAGAAGTCGAAC 2787 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 ||| || |||| || |||||| |||| || ||||||||||||||| ||||||| || Sbjct 2788 CAGAAGAACCTTGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATTATCGAGTACACC 2847 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA 94659 || ||||| |||| || ||||| ||||||| ||||||| |||||| || ||| Sbjct 2848 TCGCCGGAGGAGACGGCGGTGTGCAACCTGGCCTCCATCGCGGTGTCCAAGTTTGTG--- 2904 Query 94660 GATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGG-GAAG 94718 | | | || | | |||||| | | |||| || || | | |||| Sbjct 2905 ---GACCGCGCGAAGAACGA---GTTCGACC---ACCAGCTGCTGTACGAGGTGACGAAG 2955 Query 94719 GATGGTCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTC----CCG- 94770 || | || | ||||||||| | || || ||| ||||| |||||||||| ||| Sbjct 2956 GA-GATCACGCTCAACCTGAACCGCGTCATTGACCGGAACTACTACCCCGTCGAAACCGC 3014 Query 94771 GAGGCGGAGAACTCAAACCTGAAGCATCGGCCCA-TCGGCATCGGCGTCCAGGGTTTCGC 94829 | | || || | || || ||| | |||| ||||| ||||||| ||||| |||| Sbjct 3015 GCGCCGCAGCA-----ACATGC-GCAACCGCCCGGTCGGCCTCGGCGTGCAGGGCCTCGC 3068 Query 94830 GGACGCGCTGGTGA-TGATGCGTCTGCCCT--ACGACTCTGTCGACGCGGCGGGTTTGAA 94886 |||||| || || || | || ||||||| || | | | | ||| || | | || Sbjct 3069 GGACGC-CTTCTGCCTGCTCCGCCTGCCCTTCACCAGCCCGGAGGCGCAGCAGCTC--AA 3125 Query 94887 TTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAG 94946 | |||| ||||| | |||||| |||| ||| || | ||||| || ||||| Sbjct 3126 CGAGGACATCTTCGAGACCATTTACTACGCCGCCGTGGAGTCCTCCGTGGACCTGGCCG- 3184 Query 94947 ATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGA-ACAGGGCATTTTTC 95005 ||| | || || |||| | ||| ||| |||| | ||||| | | Sbjct 3185 --CGGTGGAGGGACCGTACGAGACCTTCAA-GGACAGCCCCGCCTCAAAGGGCCAGCTCC 3241 Query 95006 AGTTCGACCTCTGGGGTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCT----A 95058 |||||||||| ||| | || ||| | || | | ||||||| || || | Sbjct 3242 AGTTCGACCTGTGGCACGAGACGCCGAAGAGCGGCCGCTGGAACTGGGACGCCCTCAAGA 3301 Query 95059 CGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACG 95118 |||| || || | ||| || ||| ||||||| | || || |||||||| Sbjct 3302 AGCGC----GTCGTCGAGGTCGGCATGCGCAACTCGCTGCTCCTCGCGCCGATGCCCACA 3357 Query 95119 GCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTG 95178 ||||| || |||||||||| ||||||||||||| ||||| ||||||||||||||| | Sbjct 3358 GCCTCGACCTCGCAGATCCTCGGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATC 3417 Query 95179 TACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGAC 95238 ||| | | || ||||| ||| || |||||||| | |||||| |||| | ||| Sbjct 3418 TACGTCCGCCGCGTGCTGAGCGGCGAGTTCCCCGTGGTGAACAAGTACCTGGTGACCGAC 3477 Query 95239 CTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGC 95298 || | | ||| ||||| | ||||| || |||| | | | | |||||| Sbjct 3478 CTCATCAAGCGGGGCCTGTGGAGCGACAAAATCCGGAACGAGATCATCACCTTCAACGGG 3537 Query 95299 TCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGG 95358 || || ||| | | | | || || |||||| | | ||| ||| ||||||||| Sbjct 3538 TCTGTGCAGCATGTGATGGACATCCCCGAGGACCTGCGCGAGCTGTACCGCACCGTGTGG 3597 Query 95359 GAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||| |||||||| | ||||| |||||||||||||| Sbjct 3598 GAGATCTCGCAGCGCACCCTCATCGACATGGCGGCCGCCCGCGG 3641 Score = 192 bits (212), Expect = 6e-44 Identities = 303/433 (70%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || |||||||| || |||||||| || ||||| ||| |||||| || || ||||| Sbjct 2140 GCGACCCCGACGCTCTTCAACGCCGGCACCCCTAAGCCGCAGATGAGCTCCTGCTTCCTC 2199 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || ||| |||| |||| ||| || || | ||||| |||||||| |||||| Sbjct 2200 GTGGCGATGAAGGACGACAGCATTGAGGGCATCTACGACACGCTCAAGGAGTGTGCGGTG 2259 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || ||| || || ||||| ||| || ||| || | || ||| || | Sbjct 2260 ATCAGCAAGGCCGCCGGCGGCATCGGCATCCACGTGCACAACATCCGCGCCGCCGGCAGC 2319 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| ||||| |||||||||||| | || ||| |||| || | ||| Sbjct 2320 TACATTGCCGGCACCAACGGCACGTCCAACGGCCTCATGCCGATGATCCGCGTGTGGAAC 2379 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| |||||||| |||||||| || || | | | ||||| | |||||| | || Sbjct 2380 AACACGGCCCGCTACGTCGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCGATGTAC 2439 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG---AACCACGGC 94248 |||||||| |||||||| ||||| | ||| | ||| ||| ||| ||| Sbjct 2440 CTCGAGCCGTGGCACGCCGACGTCTTCGAGTTCCT---GCTGATGAAGCGCAACACGGGC 2496 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | || | |||||||||||||| || ||| | || ||||| || ||| Sbjct 2497 AAGGACGACCAGCGCGCGCGCGACCTCTTCTACGCCCTGTGGATCCCCGACCTCTTCATG 2556 Query 94309 AAACGCGTCGAGA 94321 || |||||| ||| Sbjct 2557 AAGCGCGTCAAGA 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494669856470960