Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4029 197 1e-45 seq5997 122 8e-23 seq2387 120 3e-22 seq990 116 4e-21 seq8454 114 1e-20 seq6152 114 1e-20 seq70 111 1e-19 >seq4029 Length=1979 Score = 197 bits (218), Expect = 1e-45 Identities = 304/423 (72%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGG 47218 ||||||||| |||||||||| ||| ||| |||| | || || | | || | || Sbjct 1039 GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCC-ATCTTCTGGCTCAAGAAGCGCGG 1097 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 || |||||||||||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct 1098 CGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACAC 1157 Query 47279 CAACTTTGCCTGTCTCTACTACAACA-CTAGAGTCGATCAAAAGTTGGA-CGTGCCCACC 47336 | |||| ||||| || |||||||| | | | || | || ||| | || | || | Sbjct 1158 CGACTTCGCCTGCCTGCTCTACAACAGCCACA-TCAAGCACAAGCTCCCGCGCGACCGC- 1215 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 || || ||| | |||| ||||||| ||| |||| |||||| || ||| || ||| Sbjct 1216 GTGCTCGCCATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGCTG 1275 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | | | | || |||||||| ||| | ||||| |||||||||| || |||||| Sbjct 1276 CCGGTGCGTCTGATCGGCATGAACGCCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCC 1335 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGA 47515 |||||||||||||| ||| | || ||| ||| || || ||| || ||||| Sbjct 1336 GACCGCCTGCTCGTGTCGCT-CGGCCTCGAGAAGCACTACAACTCCACGAACCCCTTCGA 1394 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 || ||| | | || |||||| |||||||||||||| ||||||||| |||||||| Sbjct 1395 CTTCATGGAGATGATCTCGCTCACCGGCAAGACCAACTTCTTCGAGAAGAAGGTCGGCGA 1454 Query 47576 ATA 47578 || Sbjct 1455 GTA 1457 >seq5997 Length=1133 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 594 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 535 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 534 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 475 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | |||||| Sbjct 474 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 415 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || |||||||| Sbjct 414 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 368 >seq2387 Length=3272 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| ||||| || ||||| || | Sbjct 332 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 273 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 272 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 213 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 212 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 153 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | | | ||| ||||||||||| || || || || |||||||| ||| Sbjct 152 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATAGCT 102 >seq990 Length=6061 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 716 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 657 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 656 AGTGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 597 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | |||||| Sbjct 596 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 537 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || |||||||| Sbjct 536 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 490 >seq8454 Length=528 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 300 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 241 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 240 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 181 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 180 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 121 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 120 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 73 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 528 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 469 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 468 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 409 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 408 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 349 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 348 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 301 >seq6152 Length=1087 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 251 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 191 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 132 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 131 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 72 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 71 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 24 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 1042 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 983 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 982 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 923 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 922 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 863 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | | | ||| ||||||||||| || || || || |||||||| ||| Sbjct 862 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATAGCT 812 >seq70 Length=16190 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||| ||||| || || || ||||| || | | |||||| Sbjct 16188 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 16129 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || |||||||||||| Sbjct 16128 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 16069 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | |||| ||||| | ||| || || | | | | Sbjct 16068 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATC 16009 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||||||||| || || || || |||||||| ||| Sbjct 16008 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATAGCT 15970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475449529126240