Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1671 100 3e-16 seq5997 91.5 1e-13 seq990 86.0 6e-12 seq2387 82.4 7e-11 >seq1671 Length=4299 Score = 100 bits (110), Expect = 3e-16 Identities = 375/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Plus Query 123149 CGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCAC 123208 ||||||||| ||| | |||||||| || | | | | ||| ||| ||| |||| Sbjct 2274 CGGCGGCATCGGCATCCACGTGCACAACATCCGCGCCGCCGGCAGCTACATTGCCGGCAC 2333 Query 123209 CGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCA 123268 | |||| | || ||| ||| | ||| | || || | || ||| | | || | Sbjct 2334 CAACGGCACGTCCAACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCGCTA 2393 Query 123269 CGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCA 123325 |||||||||||||||| || ||||| ||||| | ||||| || || || |||||||| Sbjct 2394 CGTCGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCGATGTACCTCGAGCCGTGGCA 2453 Query 123326 CGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGC 123385 || || || | ||| || | | || ||||||| ||| ||| || || || Sbjct 2454 CGCCGACGTCTTCGAGTTCCTGCTGATGAAGCGCAACACGGGCAAGGACGACCAGCGCGC 2513 Query 123386 CCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGA 123445 ||||| | || ||||| | ||| | ||||| | || ||| ||||| || ||| Sbjct 2514 GCGCGACCTCTTCTACGCCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCAAGAGCGA 2573 Query 123446 CGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC-GGCTTGAGCGACGTTTACGGCA 123504 ||| |||| |||| ||| | ||| | | ||| ||| | |||||| |||||| Sbjct 2574 GGGCAAGTGGACGCTGATG-GACCCCAACACCACCCCGGGCCTCAGCGACTGCTACGGCG 2632 Query 123505 ATCAGTTTGACGAGTTGTACGCGCAATACGA-GCGCGAAGGCAAACAGGTTAGTCAGGTT 123563 | |||| || || | |||| | | ||||| ||||| |||| || | || | Sbjct 2633 AGGAGTTCGAGAAGCTTTACGAGGACTACGAGGCGCG-CGGCATGGGCGTCCG-CACCAT 2690 Query 123564 CC-GGCACGTGA---TTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCC 123619 || ||| | || | |||| || ||||| | || |||| || || ||| Sbjct 2691 CCAGGCGCAGGAGCTCTGGTTC---GCCATCATCGAGTCCCAGATCGAGACGGGCGTGCC 2747 Query 123620 GTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAAT 123679 | |||| | ||||| |||||||||||| ||| | || |||| ||| | || || || Sbjct 2748 CTTCATGTTGTACAAGGACGCCTGCAACGAGAAGTCGAACCAGAAGAACCTTGGCACCAT 2807 Query 123680 AAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || || || || ||| |||| |||||||| |||| Sbjct 2808 CAAGTGCTCCAACCTGTGCACCGAGATTATCGAGTACA 2845 >seq5997 Length=1133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 594 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 535 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 534 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 475 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| | |||||| Sbjct 474 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGCCTCGAC 416 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | | ||| |||||||| || || || || || || |||||| Sbjct 415 CTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATC 367 >seq990 Length=6061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 716 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 657 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 656 AGTGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 597 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| | |||||| Sbjct 596 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGCCTCGAC 538 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | | ||| |||||||| || || || || || || |||||| Sbjct 537 CTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATC 489 >seq2387 Length=3272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || |||||||| || ||||||||||| || || || Sbjct 335 ATACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCC 276 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || || ||| | |||| || |||||||||||| Sbjct 275 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGC 216 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | |||||| | ||| Sbjct 215 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGCCTC 157 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || | | ||| |||||||| || || || || || || ||||| || Sbjct 156 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATAGC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451954462754960