Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4029 159 6e-34 seq1671 111 3e-19 >seq4029 Length=1979 Score = 159 bits (176), Expect = 6e-34 Identities = 303/438 (69%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| |||||||||||||| | || || Sbjct 1464 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCA 1406 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| |||| |||||| | || ||| ||||| | ||||| | | | | Sbjct 1405 TCTCCATGAAGTCGAAGGGGTTCGTGGAGTTGTAGTGCTTCTCGAGGCCGAGCGACACGA 1346 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || || || |||||||| | ||| |||| ||| || || | || Sbjct 1345 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGGCGTTCATGCCGATCA 1286 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | || || ||||| || | | ||||||||||| || |||| || ||||| | | Sbjct 1285 GACGCACCGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGA 1226 Query 159867 TCTGCGAG-ACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 | ||||| || || ||| | ||||| | |||||| || | || ||||| Sbjct 1225 T-GGCGAGCACGCGGTCGCGCGGGAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAG 1167 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || |||||| |||||| |||||||| || ||||||| ||||||| | | ||||||| Sbjct 1166 GCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCG 1107 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGAT 160044 ||||| | || ||| |||||||| || |||| |||| ||| | ||| || ||||| Sbjct 1106 GGCATCACGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAAGAT 1048 Query 160045 CCCCTCCACGGCCGCAAA 160062 ||||| || ||||| || Sbjct 1047 GCCCTCGACCGCCGCGAA 1030 >seq1671 Length=4299 Score = 111 bits (122), Expect = 3e-19 Identities = 496/765 (65%), Gaps = 23/765 (3%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || ||||||| ||||||| | |||| || | | | | || ||||||||||| || Sbjct 3804 GTCGACGGTGAACTTGATGGCGTCCGCGGCGGGGCGGGTGCGGAGGTAGTACATGCCCGT 3745 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || || | ||| | || | |||||| || | | | || | |||||||| Sbjct 3744 CTTGAGCCCGGACCTCCAGCAGTGGAAGTGCATCGACGTGATCTGGCCCGAGTTGGGGTT 3685 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | | | | ||||| ||||| ||||| ||| | | || | || ||||| Sbjct 3684 CTCGAGGAAGAGGTTCATCGACTGCGACTGGTCAATGTACTTGCCGCGGGCGGCCGCCAT 3625 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 | ||| | ||| |||||| ||||||||||| || | ||| || | || | Sbjct 3624 GTCGATGAGGGTGCGCTGCGAGATCTCCCACACGGTGCGGTACAGCTCGCGCAGGTCCTC 3565 Query 204082 AGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTCATCCTCG-TC 204139 || | || | || | ||| | || |||||| || || | |||| | | | | Sbjct 3564 GGGGATGTCCATC-ACATGCTGCACAGACCCGTTGAAGGTGATGA-TCTCGTTCCGGATT 3507 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || | ||||| |||| | |||| || || |||||||| ||| | | | Sbjct 3506 TTGTCGCTCCACAGGCCCCGCTTGATGAGGTCGGTCACCAGGTACTTGTTCACCACGGGG 3447 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || ||| |||||| | ||| | | | |||| |||||| || ||||| |||| Sbjct 3446 AACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCG 3387 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||||| ||||| | ||| ||| |||||||| || || |||||||| |||||| Sbjct 3386 TTGTTGCCGAGGATCTGCGAGGTCGAGGCTGTGGGCATCGGCGCGAGGAGCAGCGAGTTG 3327 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTC---AGAGAGGTCCAG-TCGTGC-ATCGCAC 204374 |||| ||| | ||| ||||||| || | | |||| || || ||| | Sbjct 3326 CGCATGCCG---ACCTCGACGACGCGCTTCTTGAGGGCGTCCCAGTTCCAGCGGCCGCTC 3270 Query 204375 -TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC--TTGACTGACTGGGCTGCCCT 204431 | || || || ||||| ||||||||| | ||| |||| | | |||||| ||| Sbjct 3269 TTCGGCGTCTCGTGCCACAGGTCGAACTGGAGCTGGCCCTTTGA--GGCGGGGCTGTCCT 3212 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGCGTGA 204490 || | ||| || || ||| | | ||||| | ||| |||| ||| |||| Sbjct 3211 TGAAGGTCTCGTACGGTCCCTCCACCGCGGCCAG-GTCCACGGAGGACTCCACGGCGGCG 3153 Query 204491 TAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAACGC 204549 ||||| |||||||| ||||| | || || | ||| | ||||||| | | || | Sbjct 3152 TAGTAAATGGTCTCGAAGATGTCCTCG-TTGAGCTGCTGCGCCTCCGGGCTGGTGAAGGG 3094 Query 204550 CAGACCCAGCATGGCA-AACACGTCCGCCAAGCCCTGCACTCCGA 204593 ||| | |||| |||| || ||||||| | ||||||||| |||| Sbjct 3093 CAGGCGGAGCA-GGCAGAAGGCGTCCGCGAGGCCCTGCACGCCGA 3050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795069462390560