Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq3186 224 1e-53 >seq3186 Length=2502 Score = 224 bits (248), Expect = 1e-53 Identities = 495/734 (67%), Gaps = 40/734 (5%) Strand=Plus/Minus Query 135447 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 135506 ||||| || ||| || |||| ||| |||||||||||||||||||| || || || Sbjct 2383 TCCACCAGCTCCCCTTGCGCCTGCATCACCGCGTCGATGTCCTTGTACGCGGCTGGCGTT 2324 Query 135507 TCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 135566 || || | |||||| ||||| || |||||||| || |||| || ||| | || || Sbjct 2323 TCATCCAGCACGCCCGCGTCTTTGCGGCACTCTACCCCCTGCGTCGCCGCCACGTGCTCG 2264 Query 135567 TCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGA 135625 |||| || ||| | ||| | | | | || || | || ||| |||||||||||||| Sbjct 2263 GCCAGCGTAAAGCGGCGCTTCGTCTCGCTTCTGCTGAAGCG-CCGCCCCGCGCCGTGCGA 2205 Query 135626 GCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCAT 135685 ||| |||||| | | ||| |||||| | ||||||||||||||| || ||||| Sbjct 2204 GCAGGAGCAGTAGCTGCTCGCGTTGCCCCTCCCGCGCACGATGTAGCTGCGCGCGCCCAT 2145 Query 135686 CGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCAC 135745 ||| |||||||| | ||| || | ||| || |||||| ||||||||||||||||| Sbjct 2144 CGACCCGGGGATCACGGCGAGCTCGCCCTGCTTGGCCGACGTCGCGCCCTTGCGGGTCAG 2085 Query 135746 GAAGACCCACTCGTC-GAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCA 135796 | ||| ||| | || || | | | || ||||||||||||||||| Sbjct 2084 CCACACCGCCTCCCCGGACGTCGCGTCCACCACGAAGCGCTCCACGTAGTTGTGGTGGCA 2025 Query 135797 GTTCACCGCTTCCTTGTCCGTC--TTGA-------ACGGCGGCAGGCCCGACGC-CCGCA 135846 |||||| || | | || ||||| || || | ||||||| | ||| || | Sbjct 2024 GTTCACGGCGTGCGTG-CCGTCGACGGAGAAGGTGACCGAGGCAGGCAAGGCGCGGCGGA 1966 Query 135847 TGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCC 135906 || || ||| | | ||||||| | | ||| || | ||| | |||| ||| Sbjct 1965 CCGCGTCGAGGGCGAGCTCCATCATGACCCGGCGATTCCACATGGCGTACGCCTGCGCCC 1906 Query 135907 AGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGCCAAGCAAGGT 135966 | | || ||| | | ||| || | || | | ||| || ||| | || |||| Sbjct 1905 ACTCCACCGCTGCAATGTACTCCCGAAAGTGGGCCGTGCCCTCCGTGAGGTAGGCGAGGT 1846 Query 135967 CCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCATCATCTC---CTTGGCCTTCTCGA 136023 |||||| || || || || || ||| || || ||| || || ||| ||||| Sbjct 1845 CCTTGTGGGGCAGCGTGTGCACG--ACG--GCGGC--CATGTCTTTCTGGGCGAGCTCGA 1792 Query 136024 TGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGA 136083 || || | | ||||||| |||||| | ||| |||||||| ||||| ||||||||||| | Sbjct 1791 TGTAGGTGCTGCCGATGCGGTTGCCAATGCCACGCGAGCCAGAGTGCAGCATCACCCACA 1732 Query 136084 CGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCA 136134 || ||| |||| | ||| |||||||| ||||| |||||||| |||| ||| | Sbjct 1731 CGTGCTTCTGGACGGGGTCGTTGTCCAGGCAGACTTCGATAAAGTGGTTCCCGCTGCCGA 1672 Query 136135 GGGTGCCCAGTTGG 136148 | ||||| || ||| Sbjct 1671 GCGTGCCGAGGTGG 1658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700369274539440