Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq3186 199 6e-46 >seq3186 Length=2502 Score = 199 bits (220), Expect = 6e-46 Identities = 608/924 (66%), Gaps = 57/924 (6%) Strand=Plus/Minus Query 139583 CCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGTTGCCCTTGCCGCGCACGAT 139642 ||||||||||||||||||||| |||||| | | ||||||||| | ||||||||||| Sbjct 2222 CCGCCCCGCGCCGTGCGAGCAGGAGCAGTAGCTGCTCGCGTTGCCCCTCCCGCGCACGAT 2163 Query 139643 GTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCGACAC 139702 |||| || |||||||| |||||||| | | ||| || | ||| || |||||| Sbjct 2162 GTAGCTGCGCGCGCCCATCGACCCGGGGATCACGGCGAGCTCGCCCTGCTTGGCCGACGT 2103 Query 139703 CGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAA------GTGGAACTC---CTTCTG 139753 ||||||||||||||||| | ||| ||| || | || | | | || Sbjct 2102 CGCGCCCTTGCGGGTCAGCCACACCGCCTCCCCGGACGTCGCGTCCACCACGAAGCGCTC 2043 Query 139754 GACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTC----TTGAAGG-----GCGG 139804 ||||||||||||||||||||||| || | | || ||||| ||||| | || Sbjct 2042 CACGTAGTTGTGGTGGCAGTTCACGGCGTGCGTG-CCGTCGACGGAGAAGGTGACCGAGG 1984 Query 139805 CAGGCCCGAGGC-GCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGATCC 139863 ||||| | || ||| | ||||| ||| | | |||||| | | ||| || | Sbjct 1983 CAGGCAAGGCGCGGCGGACCGCGTCGAGGGCGAGCTCCATCATGACCCGGCGATTCCACA 1924 Query 139864 GCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCCTT 139923 ||| | |||| |||| | || ||| | | ||| || || | | | ||| | Sbjct 1923 TGGCGTACGCCTGCGCCCACTCCACCGCTGCAATGTACTCCCGAAAGTGGGCCGTGCCCT 1864 Query 139924 CCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGAC-GCAGCATCATC 139982 ||| || | ||||||||||||| | || || | || | |||| || || ||| Sbjct 1863 CCGTGAGGTAGGCGAGGTCCTTGTGGGGCAGCGTGTG-----CACGACGGCGGC--CATG 1811 Query 139983 TC---CTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 140039 || || ||| ||||||| || | | ||||||| |||||| | ||| |||||||| Sbjct 1810 TCTTTCTGGGCGAGCTCGATGTAGGTGCTGCCGATGCGGTTGCCAATGCCACGCGAGCCA 1751 Query 140040 GAGTGGAGCATCACCCAGACGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATG 140090 ||||| ||||||||||| ||| ||| |||| | ||| |||||||| ||||| Sbjct 1750 GAGTGCAGCATCACCCACACGTGCTTCTGGACGGGGTCGTTGTCCAGGCAGACTTCGATA 1691 Query 140091 AAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGGGTC 140150 |||||||| |||| ||| |||||||| || ||| || | ||| | || | ||| Sbjct 1690 AAGTGGTTCCCGCTGCCGAGCGTGCCGAGGTGGTTGATGTGGTTCGACTT-ACGCAGGTG 1632 Query 140151 TTGTAC-TTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCG-AGTCGAC-CCACTTG 140207 | || || ||| |||| ||| |||| | || |||| ||| || || | | || Sbjct 1631 CGGCACACGGTTGCACAGCTCCTCAAACCCGTCTGCCAGCTCCGCTTTCCACACGGCCTG 1572 Query 140208 CGCATGAT-CG--AGTTCGGGATGCCGCTACGCC-----CGTTCCAG--CCGCCCGACGG 140257 | || | | || | ||| ||| | |||| ||||| | |||||| | Sbjct 1571 CACACGCTGCGGCACCTCGTTGCGCCAC-CCGCCAACGTCGTTCTCGGAGCGCCCGCTG- 1514 Query 140258 ACCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTC 140317 || || ||||| |||| | ||||||| || |||| || | || | Sbjct 1513 -TGCGTCCGTCCGTGGGGGATGCTCGCCTCGATCTCCGTCCGCATGTTCTCCAGCGAGCT 1455 Query 140318 GGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCAC 140377 ||||| | | | | | ||||| || ||| |||| ||| ||||| |||||||| || Sbjct 1454 CGGCAGCTGCTACGGCACCAGCGTCGTCTTCACAGCCACCATCCCGCACCCGATGTCGAC 1395 Query 140378 GCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCC 140437 ||| ||| || ||||||| |||||| | || |||||||||| || || || | || Sbjct 1394 GCCGACGCTGGCGGGGATGAGGGCGCCGCTCGTGGGGATCACCGTCCCGACCGTGCACCC 1335 Query 140438 GATGCCCATGTGGACGTCCGGCAT 140461 || || ||||||||| ||||| Sbjct 1334 AATACCGCCGTGGACGTCGGGCAT 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715698821452800