Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1671 279 1e-69 seq4029 190 4e-43 >seq1671 Length=4299 Score = 279 bits (308), Expect = 1e-69 Identities = 1016/1568 (65%), Gaps = 52/1568 (3%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 ||||||| ||||| |||||| ||| | | | | | | || |||||||| |||| Sbjct 3674 AGGTTCATCGACTGCGACTGGTCAATGTACTTGCCGCGGGCGGCCGCCATGTCGATGAGG 3615 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCG 212813 | ||| |||| |||||||||||| | | | || |||||||| |||| | | Sbjct 3614 GTGCGCTGCGAGATCTCCCACACGGTGCGGTACAGCTCGCGCAGGTCCTCGGGGATGTCC 3555 Query 212814 GGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 | | |||||||||||| || || | | || || || | ||| |||| Sbjct 3554 ATCACATGCTGCACAGACCCGTTGAAGGTGATGATCTCGTTCCGGATTTTGTCGCTCCAC 3495 Query 212874 AGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAG 212933 ||||||| | ||| | ||||||| ||| || | |||| || || Sbjct 3494 AGGCCCCGCTTGATGAGGTCGGTCACCAGGTACTTGTTCACCACGGGGAACTCGCCGCTC 3435 Query 212934 AGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGA 212993 ||||| | | ||| | ||| || ||| ||||||||| || ||||||||| || || Sbjct 3434 AGCACGCGGCGGACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGG 3375 Query 212994 ATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||| | || |||||||||||| || || | || || ||| | || ||| | Sbjct 3374 ATCTGCGAGGTCGAGGCTGTGGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCGACC 3315 Query 213054 TCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTC 213113 ||| ||| | | | || | |||||| ||| | ||| | || ||| | | | Sbjct 3314 TCGACGACGCGCTTCTTGAGGGCGTCCCAGTTCCAGCGGCC-----GCTCTTCGGCGT-C 3261 Query 213114 ACGTTCCACATGTCAAACTGCAAGATG--CCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 ||| ||||| ||| ||||| | | || |||||| |||||||| ||| | | | Sbjct 3260 TCGTGCCACAGGTCGAACTGGA-GCTGGCCCTTTGAGG-CGGGGCTGTCCTTGAAGGTCT 3203 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 ||| || || | | || |||||| || ||| | || || ||| |||||||| |||| Sbjct 3202 CGTACGGTCCCTCCACCGCGGCCAGGTCCACGGAGGACTCCACGGCGGCGTAGTAAATGG 3143 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATC---ATCA 213288 | || || || ||| |||||||| || ||||| ||| |||||||||| | || Sbjct 3142 TCTCGAAGATGTCCTCGTTGAGCTGCTGCGCCTCCGGGCTGGTGAAGGGCAGGCGGAGCA 3083 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 || ||| | || || || ||||| || |||| ||||| || | || | || || Sbjct 3082 GGCA---GAAGGCGTCCGCGAGGCCCTGCACGCCGAGGCCGACCGGGCGGTTGCGCATGT 3026 Query 213349 TAGACTTGGAGCACTCCTCCAA-GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 | | || || | | | | |||||| |||| | ||| |||| ||| |||||| Sbjct 3025 T-GCTGCGGCGCGCGGTTTCGACGGGGTAGTAGTTCCGGTCAATGACGCGGTTCAGGTTG 2967 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 | ||| | | || || || | | ||| || ||| | |||| ||| | || Sbjct 2966 AGCGTGATCTCCTTCGTCACCTCGTACAGCAGCTGGTGGTCGAACTCGTTCTTCGCGCGG 2907 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAG 213524 | |||||||| | || |||||| |||||||||||| || ||| ||||| | ||| Sbjct 2906 TCCACAAACTTGGACACCGCGATGGAGGCCAGGTTGCACACCGCCGTCTCCTCCGGCGAG 2847 Query 213525 TCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGG 213584 |||||||| || |||||||||||||||||| ||| ||||||||| ||||||| Sbjct 2846 ---GTGTACTCGATAATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTC 2790 Query 213585 TGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGC 213644 ||||| ||||| ||||| | |||||||| | |||| |||| || ||||| | | Sbjct 2789 TGGTTCGACTTCTCGTTGCAGGCGTCCTTGTACAACATGAAGGGCACGCCCGTCTCGATC 2730 Query 213645 TGGGACACCAGTATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCC 213703 |||||| | | || | |||||| | |||| |||| || || | | || Sbjct 2729 TGGGACTCGATGATGGCGAACCAGAGCT-CCTGCGCCTGGATGGTGCGGACGCCCATGCC 2671 Query 213704 GGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC---CCAGACCCTGTC 213760 | || |||||||| | ||||| |||| | ||| || | ||| ||| | ||| Sbjct 2670 GCGC---GCCTCGTAGTCCTCGTAAAGCTTCTCGAACTCCTCGCCGTAGCAGTCGCTG-- 2616 Query 213761 CAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTC-ATCTCTGACTCTCT 213819 || ||||| || ||| ||| || |||| | || || ||| |||| | || Sbjct 2615 -AGGCCCGGGGTGGTGTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCT-TGACGCGCT 2558 Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 |||||| ||||| |||| |||||| ||| ||| ||||| | | | | |||||| Sbjct 2557 TCATGAAGAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCGCGCGCGCGCTGGTCGTCCT 2498 Query 213880 CTCCAGAGTTTTTGCGC-AGATC--TAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCA 213936 || | | |||||| ||| || || || |||| ||| |||||||||||||| | Sbjct 2497 TGCCCG---TGTTGCGCTTCATCAGCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGA 2441 Query 213937 TGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCA 213993 ||| || || ||||||||| | ||| |||||||||||| || | |||| Sbjct 2440 GGTACATCGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCGACGTAGCGGGCCGTGT 2381 Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 |||| | | ||| | | || | || ||||||||| |||||||| || || || | Sbjct 2380 TGTTCCACACGCGGATCATCGGCATGAGGCCGTTGGACGTGCCGTTGGTGCCGGCAATGT 2321 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 | ||||| ||| | | |||| || | || || ||||| |||||| |||| || Sbjct 2320 AGCTGCCGGCGGCGCGGATGTTGTGCACGTGGATGCCGATGCCGCCGGCGGCCTTGCTGA 2261 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTC- 214172 ||| || || | | | || || |||||| | |||||||| || | | | Sbjct 2260 TCACCGCACACTCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATCGCCA 2201 Query 214173 --AGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGC 214230 || ||| || ||||| | ||| ||| | | | ||| | |||||| ||||| ||| Sbjct 2200 CGAGGAAGCAGGAGCTC---ATCTGCGGCTTAGGGGTGCCGGCGTTGAAGAGCGTCGGGG 2144 Query 214231 TGGCATGG 214238 | || ||| Sbjct 2143 TCGCGTGG 2136 >seq4029 Length=1979 Score = 190 bits (210), Expect = 4e-43 Identities = 559/854 (65%), Gaps = 13/854 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | |||||| |||| Sbjct 1461 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTC 1402 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | ||| || | | || ||||| | | | |||| Sbjct 1401 CATGAAGTCGAAGGGGTTCGTGGAGTTGTAGTGCT-TCTCGAGGCCGAGCGACACGAGCA 1343 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | |||||| | ||||||||| || || Sbjct 1342 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGGCGTTCATGCCGATCAGAC 1283 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| |||| || | || ||||||||||| || ||||| || | || Sbjct 1282 GCACCGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGG 1223 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 |||||| | | | |||| | ||| || ||||||| |||||| | Sbjct 1222 CGAGCACGCGGTCGCGCGGGAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGGCGA 1163 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| |||||| ||| ||||| || ||||||| ||||| |||| ||| || |||| Sbjct 1162 AGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCA 1103 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | || || | || ||||||||||| || || ||| ||||| |||||||||||||||| Sbjct 1102 TCACGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCT 1043 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || |||||||| || |||| | ||| ||| ||| || | ||||||| Sbjct 1042 CGACCGCCGCGAAGCCGATGAGGCGCTCCTGGAAGCTGGCGCCGCTGCC---GATCCAGC 986 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGA 48374 | |||||| |||||||||| |||||| || || |||| ||||| | | | | Sbjct 985 GCACGGCCCAGCTCGCCTTCTTCTGGATGCACGGGATGGTCTGCATGGCGTGCAGCAGGC 926 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 || ||| ||| | ||| | | ||||| ||||||| | ||| |||| | Sbjct 925 GCAGCTT---CTCGGCGCTGTCGGTGATGTAGGTGTCGAGCAGCACCGAGTAGGTCTCGG 869 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||| ||||||||||| | ||||| |||| | Sbjct 868 AGTGGATGTTCTCCATCATGAGCTGGAAGCCGTAGAAGGCGCGCGCCTCGGGGACCTTGA 809 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || || ||| | | | || ||||| ||| || || || | || |||| Sbjct 808 CGTCGGTCATGAAGCGCACGGCGAGGTTCTCGACGACGATGCCGTCGCTGCCGGCGAAGA 749 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| || || || || | ||| || ||||| | | |||| |||| | | Sbjct 748 AGGCGAGCACGTGCTTGATGAAGTGCTGCTCGCCCTCGCTGAGCTTGACCCAGTCGGCGA 689 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTAC 48673 ||| |||| ||||| | || |||| ||||||| | | | | ||| | |||||| Sbjct 688 GGTCGCTGCCGAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGC-TCCTTGTAC 630 Query 48674 ATGCCCCATATGTC 48687 ||| ||| ||||| Sbjct 629 TTGCGCCAGATGTC 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931432357475840