Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4029 185 2e-41 seq1671 165 2e-35 >seq4029 Length=1979 Score = 185 bits (204), Expect = 2e-41 Identities = 493/752 (66%), Gaps = 13/752 (2%) Strand=Plus/Plus Query 25575 CGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAA 25634 ||||||||| || ||||| ||||| | || ||||| || | | || || || || Sbjct 717 CGAGCAGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTCGT 776 Query 25635 CGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTA 25694 |||||| || || | | |||| | || || || | ||||| ||||| Sbjct 777 CGAGAACCTCGCCGTGCGCTTCATGACCGACGTCAAGGTCCCCGAGGCGCGCGCCTTCTA 836 Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGAC 25754 ||| |||||| | || || || | ||||| ||| || | ||| || || Sbjct 837 CGGCTTCCAGCTCATGATGGAGAACATCCACTCCGAGACCTACTCGGTGCTGCTCGACAC 896 Query 25755 GTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCA 25813 ||||| || ||| |||||||| || | || ||| | ||||| || ||| || Sbjct 897 CTACATCACCGACAGCGCCGAGA-AGCTGCGCCTGCTGCACGCCATGCAGACCATCCCGT 955 Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||| ||| ||||||| | |||||| || |||||| |||| |||| | || Sbjct 956 GCATCCAGAAGAAGGCGAGCTGGGCCGTGCGCTGGATCGGCAGCG---GCGCCAGCTTCC 1012 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||||| || | | ||| || || || ||||||||||| ||| ||| || || ||| Sbjct 1013 AGGAGCGCCTCATCGGCTTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC- 1071 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||||||| || || |||||||| || ||| |||||||||| Sbjct 1072 GCCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTC 1131 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | |||||||| || |||| || || |||||||||||||||| ||||| | Sbjct 1132 ATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACAGCCACATC 1191 Query 26053 CTCCACAAACCTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 ||||| | || | | ||| ||| | ||||||| || || || | |||| Sbjct 1192 AAGCACAAGC--TCCCGCGCGACCGCGTGCTCGCCATCATCACCGACGCCGTCGTCATCG 1249 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 |||||||||| | ||||||||| | |||| Sbjct 1250 AGAAGGAGTTCATCTGCGACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTCA 1309 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229 ||||||| ||||| |||| || ||||||| ||||| ||| | ||| || |||| | Sbjct 1310 TGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTC-GCTCGGCCTCGAGAAG 1368 Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | ||||| | | ||||| |||||||| ||||| | || ||| | || |||||| Sbjct 1369 CACTACAACTCCACGAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACC 1428 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||||||||| || || Sbjct 1429 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 1460 >seq1671 Length=4299 Score = 165 bits (182), Expect = 2e-35 Identities = 695/1085 (64%), Gaps = 37/1085 (3%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || ||| |||| ||| |||||||| ||||| || |||||| || ||||| || Sbjct 3162 CACGGCGGCGTAGTAAATGGTCTCGAAGATGTCCTCGTTGAGCTGCTGCGCCTCCGGGCT 3103 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||||||| || |||| ||| |||| || || ||||| || |||| |||| Sbjct 3102 GGTGAAGGGCAGGCGGAGCAGGCAGAAGGCGTCCGCGAGGCCCTGCACGCCGAGGCCGAC 3043 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | || | | ||||| ||||| ||| | ||||| || |||| ||| | Sbjct 3042 CGGGCGGTTGCGCATGTTGCT-GCGGCGCGCGGTTTCGACGGGGTAGTAGTTCCGGTCAA 2984 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||| ||||| || ||||| | || ||||||| |||| |||||| | || Sbjct 2983 TGACGCGGTTCAGGTTGAGCGTGATCTCCTTCGTCACCTCGTACAGCAGCTGGTGGTCGA 2924 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 || ||| || | | | ||| ||||||| | | || | | ||||| Sbjct 2923 AC------TCGT-----TCTTCGCGCGGT-CCACAAACTTGGACACCGCGATGGAGGCCA 2876 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 |||| ||||| ||| ||| ||| ||| |||| || ||||| || || |||||| Sbjct 2875 GGTTGCACACCGCCGTCTCCTCCGGCGAGGTGTACTCGATAATCTCGGTGCACAGGTTGG 2816 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 |||||||||||| || |||| || || || ||||| ||| ||||||||||| | Sbjct 2815 AGCACTTGATGGTGCCAAGGTTCTTCTGGTTCGACTTCTCGTTGCAGGCGTCCTTGTACA 2756 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 ||| ||||| |||| ||||| | ||| | | | | || | |||||| ||| | Sbjct 2755 ACATGAAGGGCACGCCCGTCTCGATCTGGGACTCGATGATGGCGAACCAGAG--CTCCTG 2698 Query 221898 CGCTCACCGTCCTCTTGACTGCAC---CCTCG-GTCTTTTCATACCCGGTATAGAGCATG 221953 ||| | | | ||| || | || || | || | | | || || ||| | Sbjct 2697 CGC-CTGGATGGTGCGGAC-GCCCATGCCGCGCGCCTCGTAGTCCTCG---TAAAGCTTC 2643 Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 || |||| || ||||| ||| ||||| || || ||| |||||| || Sbjct 2642 TCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGGTGGTGTTGGGGTCCATCAGCGTC 2583 Query 222014 CAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 || |||| | | ||||| | || |||||||||||| ||||||||||| || | Sbjct 2582 CA---CTTGCCCTCGCTCTTGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGGCGTAG 2526 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCC---GTTGTTTTTCCTCAGATCCAAAAAC 222127 ||||| || | | ||||| || ||| ||| |||| ||| |||| || ||| Sbjct 2525 AAGAGGTCGCGCGCGCGCTGGTCGTCCTTGCCCGTGTTGCGCTTCATCAG---CAGGAAC 2469 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | ||| |||||||||||||| || || | || | ||||| ||||| | Sbjct 2468 TCGAAGACGTCGGCGTGCCACGGCTCGAGGTACATCGCGAAGGCGCCCTTGCGCTTACCG 2409 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 || ||||| || || | || ||| | | ||| | |||| | || ||| Sbjct 2408 CCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCG 2349 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 ||||| ||||||||||| |||||| ||| |||| | | ||| | Sbjct 2348 TTGGACGTGCCGTTGGTGCCGGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACGTGG 2289 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 |||||||| || |||||| || ||||| || || |||||| ||||| |||| Sbjct 2288 ATGCCGATGCCGCCGGCGGCCTTGCTGATCACCGCACACTCCTTGAGCGTGTCGTAGATG 2229 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 ||||| || ||| ||||| | || || || || || |||||| | || | | Sbjct 2228 CCCTCAATGCTGTCGTCCTTCATCGCCACGAGGAAGCAGGAGCTCATCTGCGGCTTAGGG 2169 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | | |||||| || ||||| || | ||||| || ||| ||||| ||||| || | Sbjct 2168 GTGCCGGCGTTGAAGAGCGTCGGGGTCGCGTGGGTGAAGAAGCCCTGCGACATGAGGGTG 2109 Query 222488 TACGT 222492 ||||| Sbjct 2108 TACGT 2104 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 221105 ACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTA 221164 |||| || |||||||||||| |||| || || ||||| | | ||| | ||| Sbjct 3470 ACCAGGTACTTGTTCACCACGGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTG 3411 Query 221165 GAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGC 221224 || ||||| || |||| || |||||||||||| |||||||| | || ||| |||||| Sbjct 3410 GAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCTGTGGGC 3351 Query 221225 ATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGA 221258 || || || | ||||| |||||||| |||| Sbjct 3350 ATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCGA 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928744647309440