Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2897 235 7e-57 seq1773 174 2e-38 seq1212 156 6e-33 seq2387 143 4e-29 >seq2897 Length=2733 Score = 235 bits (260), Expect = 7e-57 Identities = 468/689 (68%), Gaps = 3/689 (0%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||||||||| ||| | || || || ||||| || || || || ||||| || || || Sbjct 2573 GCTATTGGTATTGATCTGGGCACGACCTACTCCTGCGTGGGCGTGTGGCAGAACGAGCGC 2514 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || |||| ||||| || ||||| || || || || ||||| ||||| || Sbjct 2513 GTGGAGATCATTGCGAACGACCAGGGCAACCGCACGACCCCCTCCTACGTCGCCTTCACC 2454 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || ||| ||||| | || || ||||| || || ||| || |||||||| ||| Sbjct 2453 GACTCTGAGCGTCTGATCGGCGACGCCGCGAAGAACCAGGTTGCCATGAACCCCCACAAC 2394 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||||||||| || || || |||||||| ||| | ||||| | Sbjct 2393 ACCGTCTTCGACGCGAAGCGCCTCATCGGCCGCAAGTTCAAGGACTCCGAGGTCCAGAGC 2334 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| | || | | ||| || || | | | Sbjct 2333 GACATGAAGCACTGGCCCT-TCAAGGTCGTCTCCAAG-GGC-GACCTCCCCGTCGTGCAG 2277 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || || ||||| |||| || || | ||||| || | || |||||| | Sbjct 2276 GTGGAGTTCCACGGCGAGACCAAGACCTTCACCCCCGAGGAGGTCAGCTCCATGGTGCTC 2217 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | |||||||||||||| || || | | | | || || || || | || || || Sbjct 2216 CTCAAGATGAAGGAGACCGCTGAGGCCTACCTCGGCAAGCAGGTCAAGAAGGCCGTCGTC 2157 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || || ||||| || |||||||| | | || Sbjct 2156 ACCGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACGATC 2097 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || | || | || ||||| || || || || || || || || || || Sbjct 2096 GCCGGCCTCGAGGTGCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 2037 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 || |||||| | | ||| | || || || || | ||||| || ||||| || |||||| Sbjct 2036 CTCGACAAGGGCGACGACAAGGAGAAGAACGTGCTCATCTTCGACCTCGGCGGCGGTACG 1977 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || ||||| | || |||| || || || || || ||||| || ||||| || || || Sbjct 1976 TTCGATGTGACCCTGCTCACGATCGACGGCGGCATCTTCGAGGTCAAGGCCACCGCGGGC 1917 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || |||||||| || ||||| Sbjct 1916 GATACCCACCTCGGTGGTGAGGACTTCGA 1888 >seq1773 Length=4116 Score = 174 bits (192), Expect = 2e-38 Identities = 454/689 (66%), Gaps = 9/689 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | | || |||| Sbjct 251 GCCATCGGCATCGACCTGGGCACCACCTACTCCTGCGTCGGTGTGTTCAAGAACGATCAG 310 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || |||||||| || || || ||||| ||||| || Sbjct 311 GTGGAGATCATCGCGAACGACCAGGGCAACCGTACCACCCCCTCCTACGTCGCCTTCACC 370 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||||| || || ||||| || || |||| || |||||||| ||| Sbjct 371 GAAACGGAGCGCCTCGTCGGCGACGCCGCGAAGAACCAGATTGCGATGAACCCCCACAAC 430 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| ||||||||||| | || || || ||||| || | | || | Sbjct 431 ACCATCTTCGACGCGAAGCGCATGATCGGCCGGAAGTTCGACGACCCCGATCTGCAGAGC 490 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || | ||||| | | | Sbjct 491 GACATGAAGCACTGGCCCT-TCAAG--GTGACCGTGAAGGACGGCAAGCCGGTCGTGCAG 547 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | || | || || || | ||||| || || || |||||| | Sbjct 548 GTAGAGTACCAGGAGCAGGTCAAGTCCTTCTCGCCCGAGGAGATCAGCTCCATGGTGCTC 607 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | |||||||| ||||| || || | | | |||| | | |||| | || || || Sbjct 608 GTCAAGATGAAAGAGACCGCCGAGGCCTACCTGGGCGAGAAGGTGACCAAGGCCGTCGTC 667 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || || ||||| || |||||||| | | || Sbjct 668 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCGTGATC 727 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || || || | || ||||| || || || || || || || || || || Sbjct 728 GCCGGCCTCGACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCCTACGGC 787 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 |||||||||| | | | | || ||||| | ||||| || ||||| || |||||| Sbjct 788 ATGGACAAGAAGA--GTC----AGAAGAATGTGCTCATCTTCGACCTCGGCGGCGGTACG 841 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || ||||| | || |||| || || || | ||||| || ||||| || || || Sbjct 842 TTCGATGTGACCCTGCTCACGATCGACAACGGCGTCTTCGAGGTCAAGGCGACCGCGGGC 901 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || ||||| || ||||| Sbjct 902 GACACCCACCTCGGCGGTGAGGACTTCGA 930 >seq1212 Length=5313 Score = 156 bits (172), Expect = 6e-33 Identities = 319/470 (68%), Gaps = 3/470 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 4818 GCTATTGGTATCGATCTGGGCACGACCTACTCCTGCGTGGGCGTGTGGCAGAACGAGCGC 4877 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || |||| ||||| || ||||| || || || || ||||| ||||| || Sbjct 4878 GTGGAGATCATTGCGAACGACCAGGGCAACCGCACGACCCCCTCCTACGTCGCCTTCACC 4937 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || ||| ||||| | || || ||||| || || ||| || |||||||| ||| Sbjct 4938 GACTCTGAGCGTCTGATCGGCGACGCCGCGAAGAACCAGGTTGCCATGAACCCCCACAAC 4997 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||||||||| || || || |||||||| ||| | ||||| | Sbjct 4998 ACCGTCTTCGACGCGAAGCGCCTCATCGGCCGCAAGTTCAAGGACTCCGAGGTCCAGAGC 5057 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| | || | | ||| || || | | | Sbjct 5058 GACATGAAGCACTGGCCCT-TCAAGGTCGTCTCCAAG-GGC-GACCTCCCCGTCGTGCAG 5114 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || || ||||| |||| || || | ||||| || | || |||||| | Sbjct 5115 GTGGAGTTCCACGGCGAGACCAAGACCTTCACCCCCGAGGAGGTCAGCTCCATGGTGCTC 5174 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | |||||||||||||| || || | | | | || || || || | || || || Sbjct 5175 CTCAAGATGAAGGAGACCGCTGAGGCCTACCTCGGCAAGCAGGTCAAGAAGGCCGTCGTC 5234 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGC 195768 || || || || ||||||| || || || || ||||| || |||||||| Sbjct 5235 ACCGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGACGC 5284 >seq2387 Length=3272 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| ||||| ||||| || || || || || || ||| | || ||||| ||| || Sbjct 105 TATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAG 164 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| ||||| ||| | || || ||||| || || ||||| ||||| || || || || Sbjct 165 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 224 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| || || || || || || || ||||| || || || || || ||||| || ||||| Sbjct 225 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 284 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | | ||||||||||| || || ||||| || || | || || || ||| Sbjct 285 CATCCAAAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657791465986720