Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1671 197 1e-45 >seq1671 Length=4299 Score = 197 bits (218), Expect = 1e-45 Identities = 588/888 (66%), Gaps = 47/888 (5%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 147514 ||| ||||| || ||||| ||||| || |||||||| || |||| | |||||| | | Sbjct 2892 CACCGCGATGGAGGCCAGGTTGCACACCGCCGTCTCCTCCGGCGAGG-TGTACTCGATAA 2834 Query 147515 TTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGAT 147574 | |||| |||||||||| ||| || ||| || | || | ||| || ||| | Sbjct 2833 TCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTCGACTTCTCGT 2774 Query 147575 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA- 147633 |||| ||||| ||| | | |||| | || |||| ||||||| || | || | ||| Sbjct 2773 TGCAGGCGTCCTTGTACAACATGAAGGGCACGCCCGTCTCGATCTGGGACTCGATGATGG 2714 Query 147634 --AACCTATGCAGGTCCTGCGCTCGCAC----CCGCTGCCGATAGCGGCCCTCGTTTTCG 147687 |||| || |||||||| | | | | ||| || || || | | | || Sbjct 2713 CGAACCAGAGC---TCCTGCGCCTGGATGGTGCGGACGCCCAT-GCCGCGCGCCT---CG 2661 Query 147688 TACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCC-GGGACACTG 147746 || |||||| | | ||| ||||| ||||||||||| ||| ||||| ||| || Sbjct 2660 TAGTCCTCGTAAAGCTTCTCGAACTCCTCGCCGTAGCAGTCGCTGAGGCCCGGGGTGGTG 2601 Query 147747 ATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806 || || | |||||||| |||| || | || || ||||| ||| || || || || Sbjct 2600 TTGGGGTC-CATCAGCGTCCACTTGCCCTCGCTCTTGACGCGCTTCATGAAGAGGTCGGG 2542 Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCG 147863 | |||||| ||||| | || |||||||| || | ||| | |||| ||||||| Sbjct 2541 GATCCACAGGGCGTAGAAGAGGTCGCGCGC---GCGCTGGTCGTCCTTGCCCGTGTTGCG 2485 Query 147864 TTTCAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCG 147922 |||| | | | || | | ||| |||||||||||| || || | ||| | || | | Sbjct 2484 CTTCATCAGCAGGAACTCGA-AGACGTCGGCGTGCCACGGCTCGAGGTACATCGCGAAGG 2426 Query 147923 CACCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCA 147979 | || || ||||| ||||| ||||||||| | ||| || ||||||| ||||||| | Sbjct 2425 CGCCCTTGCGCTTACCGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTCCACACGCGGA 2366 Query 147980 CCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTC 148039 ||| || |||||| | | |||||||||||| || | ||||||| ||| | Sbjct 2365 TCATCGGCATGAGGCCGTTGGACGTGCCGTTGGTGCCGGCAATGTAGCTGCCGGCGGCGC 2306 Query 148040 GCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTT--TGATATGGCAGCGCAATC 148097 | | | |||||||| | ||| ||||||||| || ||| |||| || |||| | Sbjct 2305 GGATGTTGTGCACGTGGATGCCGATGCCGCCGGCGGCCTTGCTGAT----CACCGCACAC 2250 Query 148098 GCC--CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACA 148154 || | || ||||||||| || |||||||||| || | ||||| | | || || Sbjct 2249 TCCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATCGCCACG-AGGAAGCA 2191 Query 148155 CGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAA 148214 || | ||| ||||| | | || || || ||| || || || ||||||| || || Sbjct 2190 GGAGCTCATCTGCGGCTTAGGGGTGCCGGCGTTGAAGAGCGTCGGGGTCGCGTGGGTGAA 2131 Query 148215 CAATTTTTGACTCATCATGCGATACGT----CTCAATAGCGTCTTCGATGTCGTCGCCGT 148270 || || ||| | | ||||| | || | |||| ||| | ||||| Sbjct 2130 GAAGCCCTGCGACATGAGGGTGTACGTGCGGCGCA----CACGGTCGAGGTCCTTGCCGT 2075 Query 148271 GAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA 148318 | ||||| | ||| || |||| | ||||||||| || || ||| ||| Sbjct 2074 GGATGCCAATCGCCACACGCAGAATCATGTGCTGCGGGCGCTCGACAA 2027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476559809397360