Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1671 122 3e-22 seq4029 109 2e-18 >seq1671 Length=4299 Score = 122 bits (134), Expect = 3e-22 Identities = 488/762 (64%), Gaps = 10/762 (1%) Strand=Plus/Plus Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGT---CTGAAGCGCCAAACCTTGGCCAG 254811 ||| || ||||||||||| ||||||| ||||| | |||| || | || | Sbjct 2133 CACCCACGCGACCCCGACGCTCTTCAACGCCGGCACCCCTAAGCCGCAGA---TGAGCTC 2189 Query 254812 CTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCG 254871 ||||| ||| || | || | || ||||| || | ||||||| ||| ||||| | Sbjct 2190 CTGCTTCCTCGTGGCGATGAAGGACGACAGCATTGAGGGCATCTACGACACGCTCAAGGA 2249 Query 254872 ATGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGC 254931 || || | | || | | ||||||| | || || || | |||| | ||||| Sbjct 2250 GTGTGCGGTGATCAGCAAGGCCGCCGGCGGCATCGGCATCCACGTGCACAACATCCGCGC 2309 Query 254932 CAGCGGCACACCGATTCGCTCGACGAACGGACGGAGCGGCGGCATTATACCAATGATCCG 254991 | ||||| ||| | || ||||| | | |||| | || || |||||||| Sbjct 2310 CGCCGGCAGCTACATTGCCGGCACCAACGGCACGTCCAACGGCCTCATGCCGATGATCCG 2369 Query 254992 TGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTT 255051 |||| |||||| ||| ||||||||||| || || ||||| || ||| || || || Sbjct 2370 CGTGTGGAACAACACGGCCCGCTACGTCGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTT 2429 Query 255052 CACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAA 255111 | | || ||||| |||||||||||||||||| | ||| | ||| || ||| Sbjct 2430 CGCGATGTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGTTCCTGCTGATGAAGCGCAA 2489 Query 255112 GACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCT 255171 || |||| || || | | ||| |||||| ||| | ||| | ||| | ||| || Sbjct 2490 CACGGGCAAGGACGACCAGCGCGCGCGCGACCTCTTCTACGCCCTGTGGATCCCCGACCT 2549 Query 255172 GTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCC 255231 || ||| ||||| | | || | | |||| || ||| |||||| | || Sbjct 2550 CTTCATGAAGCGCGTCAAGAGCGAGGGCAAGTGGACGCTGATGGACCCCAACACCACCCC 2609 Query 255232 CGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGA-GCGTG 255290 || || ||||| | || || ||||| || || || || ||| ||||| ||| | Sbjct 2610 GGGCCTCAGCGACTGCTACGGCGAGGAGTTCGAGAAGCTTTACGAGGACTACGAGGCGCG 2669 Query 255291 CCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGCAT-G 255349 |||| | ||| ||| | | ||| || || ||||| | | || | || | Sbjct 2670 -CGGCATGGGCGTCCGCACCATCCAGGCGCAGGAGCTCTGGTTCGCCATCAT-CGAGTCC 2727 Query 255350 CAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCACATAAACGCACGGTCGAAC 255409 ||| | || || || |||| ||| | ||| |||| ||| | |||| ||||||| Sbjct 2728 CAGATCGAGACGGGCGTGCCCTTCATGTTGTACAAGGACGCCTGCAACGAGAAGTCGAAC 2787 Query 255410 CAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGTTGCACACG 255469 || ||| || || || |||| ||||||||||||||||||| | |||| Sbjct 2788 CAGAAGAACCTTGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATTATCGAGTACACC 2847 Query 255470 TCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCG 255511 || || | ||| ||| || |||||| |||| |||||| || Sbjct 2848 TCGCCGGAGGAGACGGCGGTGTGCAACCTGGCCTCCATCGCG 2889 Score = 98.7 bits (108), Expect = 3e-15 Identities = 319/485 (66%), Gaps = 14/485 (3%) Strand=Plus/Plus Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202 |||||||||||| | | ||||| ||||| || ||| ||| | || ||||| || | Sbjct 3323 TGCGCAACTCGCTGCTCCTCGCGCCGATGCCCACAGCCTCGACCTCGCAGATCCTCGGCA 3382 Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262 || || || |||| ||| | || ||||| ||| | |||||||| | ||||| Sbjct 3383 ACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTCCGCCGCGTGCTGAGCGGCG 3442 Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322 ||||| ||||||||||| ||||| ||||| |||| | | | || ||||||| || Sbjct 3443 AGTTCCCCGTGGTGAACAAGTACCTGGTGACCGACCTCATCAAGCGGGGCCTGTGGAGCG 3502 Query 256323 AGAAGATGCAACAACG-CATAATTCGGGCCCGTGGGTCGGTGCAGAACAT-TGA-GCGCT 256379 | || || | |||| || || | ||||| |||||| ||| ||| | | Sbjct 3503 ACAAAAT-CCGGAACGAGATCATCACCTTCAACGGGTCTGTGCAG--CATGTGATGGACA 3559 Query 256380 TGCCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGG 256439 | || | |||||||| | |||||||| || |||||||| |||| || | Sbjct 3560 TCCCCGAGGACCTGCGCGAGCTGTACCGCACCGTGTGGGAGATCTCGCAGCGCACCCTCA 3619 Query 256440 TCGACTTGTGCGCAG--CACGACAACCGTTTGTGGATCAGTCGCAAAGCCTCAACCTCTA 256497 ||||| || || | | || ||| || | || |||||||| | ||||||| Sbjct 3620 TCGACATGGCGGCCGCCCGCGGCAA--GTACATTGACCAGTCGCAGTCGATGAACCTCTT 3677 Query 256498 CTTTCCGGTGCCCAACTTTAAACGCTTGAC--CAACGCACACTTTTACGGGTGGCGAAAC 256555 | | | ||||||| | | || | | | ||||| || | ||| | | Sbjct 3678 CCTCGAGAACCCCAACTCGGGCCAGATCACGTCGATG--CACTTCCACTGCTGGAGGTCC 3735 Query 256556 GGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCAGCGGCCGACCCGATCCAATTC 256615 || || |||||||||||||||||||| |||||||| || || || ||| | ||| | ||| Sbjct 3736 GGGCTCAAGACGGGCATGTACTACCTCCGCACCCGCCCCGCCGCGGACGCCATCAAGTTC 3795 Query 256616 ACCGT 256620 ||||| Sbjct 3796 ACCGT 3800 >seq4029 Length=1979 Score = 109 bits (120), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 ||||||| ||||| || ||| || || | |||||| || | || || |||| Sbjct 1005 CAGCTTCCAGGAGCGCCTCATCGGCTTCGCGGCGGTCGAGGGCATCTTCTTCTCCGGCTC 1064 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| || ||||||||||| | || ||||| || | |||| ||| || ||||| || | Sbjct 1065 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCA 1123 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || ||| || |||||||| |||| |||||||||||| || ||||||| || Sbjct 1124 ACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTACAACA 1183 Query 443876 AACACATCGTGCACAAGCTGCC 443897 |||||| ||||||||| || Sbjct 1184 GCCACATCAAGCACAAGCTCCC 1205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588160456112570