Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4029 123 3e-23 seq1892 84.2 3e-11 >seq4029 Length=1979 Score = 123 bits (136), Expect = 3e-23 Identities = 347/526 (66%), Gaps = 10/526 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||| ||||| ||| | ||| ||||||| Sbjct 1457 TACTCGCCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGCGAGATCATCTCCATG 1398 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || |||||| | ||||| | | || | | || | | ||| || || Sbjct 1397 AAGTCGAAGGGGTTCGTGGAGTTGTAGTGCTTCTCG-AGGCCGAGCGACACGAGCAGGCG 1339 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| ||||| |||||| ||||| || Sbjct 1338 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGGCGTTCATGCCGATCAGACGCAC 1279 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| |||||||| ||||||| ||| | || || || | ||||||| | Sbjct 1278 CGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGGCGAG 1219 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTCCACGGCAAACT 130022 | | || | || | || ||| | || ||| |||| ||| || | Sbjct 1218 CACGCGGTC-GCGCGGGAGCTTGTGCTTGATGTGGCTGTTGTAGAGCAGGCAGGCGAAGT 1160 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| || |||||||| || || |||| || || ||||| | Sbjct 1159 CGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCA 1100 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| | Sbjct 1099 CGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGA 1040 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 130202 | |||||| | | ||| ||||| ||| | | | | || | | ||| || Sbjct 1039 CCGCCGCGAAGCCGATGAGGCGCTCCTGGAAGCTG-GCGCCGCTG--CCGATCCAGCGCA 983 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| |||||| |||| ||| ||||||| |||||| || || Sbjct 982 CGGCCCAGCTCGCCTTCTTCTGGATGCACGGGATGGTCTGCATGGC 937 >seq1892 Length=3957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 |||||| || || ||||| || | |||| |||||||| ||| ||||| || ||||||| Sbjct 2375 GATCTTGCGGTCGAAGCGGCCGGAGCGGGTGAGGGCGTTGTCGAGGATGTCCGTGCGGTT 2434 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTC 14166 ||||||||||| || | |||||||| ||| | ||||| |||| ||| Sbjct 2435 CGTCGCCGCGAGCACGATGATGCCCGAGGCGTCCTTGAAGCCGTCCAGCTC 2485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618368517224560