Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1671 246 3e-60 seq1170 118 1e-21 seq646 87.8 2e-12 seq1750 86.0 7e-12 >seq1671 Length=4299 Score = 246 bits (272), Expect = 3e-60 Identities = 477/691 (69%), Gaps = 20/691 (3%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || ||||| || || || || |||||||| || || | | || |||||| Sbjct 2130 CTTCACCCACGCGACCCCGACGCTCTTCAACGCCGGCACCCCTAAGCCGCAGATGAGCTC 2189 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||||||||| |||||||||||||| ||| || || ||||||||||| ||||||||||| Sbjct 2190 CTGCTTCCTCGTGGCGATGAAGGACGACAGCATTGAGGGCATCTACGACACGCTCAAGGA 2249 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTG 53450 |||||| ||| |||| | || || ||||| |||||| ||| | ||| |||| | Sbjct 2250 GTGTGCGGTGATCAGCAAGGCCGCCGGCGGCATCGGCATCCACGTGCAC-AACATCCGCG 2308 Query 53451 CGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCC 53510 | ||||| || || || |||||| || | || || |||| ||| ||| Sbjct 2309 CCGCCGGCAGCTACATTGCCGGCACCAACGGCACGTCCAACGGCCTCATGCCGATGATCC 2368 Query 53511 GCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGT 53570 |||| | |||||||||||||| |||||| ||||||| || || ||||||||||| | | Sbjct 2369 GCGTGTGGAACAACACGGCCCGCTACGTCGACCAGGGCGGCGGTAAGCGCAAGGGCGCCT 2428 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 |||| || |||||||||||||||||||||||| | | ||||| || | || | | Sbjct 2429 TCGCGATGTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGTTCCTGCTGATGAAGCGCA 2488 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689 | ||| | || || |||| || ||||| || ||| || |||||||| || ||| Sbjct 2489 ACACGGGCAAGGACGACCAGCGCGCGCGCGACCTCTTCTAC-GCCCTGTGGATCCCCGAC 2547 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGG---AGTGGTACCTGATGTGCCCGAACGAG 53746 ||||||||| ||| | ||| ||||| ||||| |||||| ||| ||| | Sbjct 2548 CTCTTCATG---AAGCGCGTCAAGAGCGAGGGCAAGTGGACGCTGATGGACCCCAAC-AC 2603 Query 53747 TGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTTTAACGAGATGTA-TCGGACGTACG 53804 |||||| | ||| | | |||||| |||||||| | || | || |||| |||| Sbjct 2604 CACCCCGGGCCTCAGCGACTGCTACGGCGAGGAGTTCGAGAAGCTTTACGAGGAC-TACG 2662 Query 53805 CAGTTCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 | | ||| || | | | || |||||| ||| | ||| || ||| Sbjct 2663 AGGCGCGCGGCATGGGCGTCCGCACCA---TCCAGGCGCAGGAGCTCTGGTTCGCCATCA 2719 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 || || |||| | |||||||| ||| | ||||| |||||||| | |||||||| Sbjct 2720 TCGAGTCCCAGATCGAGACGGGCGTGCCCTTCATGTTGTACAAGGACGCCTGCAACGAGA 2779 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 || |||||||||||| | ||| |||||| Sbjct 2780 AGTCGAACCAGAAGAACCTTGGCACCATCAA 2810 Score = 138 bits (152), Expect = 1e-27 Identities = 309/458 (67%), Gaps = 7/458 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||| | ||||| ||||| || || ||||| | |||||| | Sbjct 3319 GGCATGCGCAACTCGCTGCTCCTCGCGCCGATGCCCACAGCCTCGACCTCGCAGATCCTC 3378 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 |||||||||||| |||||||| | ||| ||||||||||| | ||||| | | ||| Sbjct 3379 GGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTCCGCCGCGTGCTGAGC 3438 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| | || | |||||| |||| || | ||||| ||| | ||| Sbjct 3439 -GGCGAGTTCCCCGTGGTGAACAAGTACCTGGTGACCGACCTCATCAAGCGGGGCCTGTG 3497 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAAT---CTGGA 55713 || | | ||| || || || | | ||||| || ||| || |||| Sbjct 3498 GAGCGACAAAATCCGGAACGAGATCATCACCTTCAACGGGTCTGTGCAGCATGTGATGGA 3557 Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || || | || ||| | ||||| || ||||||||||| | ||| | || Sbjct 3558 CATCCCCGAGGACCTGCGCGAGCTGTACCGCACCGTGTGGGAGATCTCGCAGCGCACCCT 3617 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || |||||| || | || || |||||| |||||||| ||||| ||||| |||| Sbjct 3618 CATCGACATGGCGGCCGCCCGCGGCAAGTACATTGACCAGTCGCAGTCGATGAACCTCTT 3677 Query 55834 CATGGAGAATCCTTCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 | | ||||| || ||| || | || | | ||||||||||| || | |||| | | Sbjct 3678 CCTCGAGAA-CCCCAACTCGGGCCAGATCACGTCGATGCACTTCCACTGCTGGAGGTCCG 3736 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 | ||||||||||| |||||||| || || |||||| || Sbjct 3737 GGCTCAAGACGGGCATGTACTACCTCCGCACCCGCCCC 3774 >seq1170 Length=5437 Score = 118 bits (130), Expect = 1e-21 Identities = 322/490 (66%), Gaps = 15/490 (3%) Strand=Plus/Plus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| || ||||||||| | | |||||||||| ||||| ||||||||||| ||| Sbjct 518 CTGCATCAGCAGCCACATGCCGTACACGTAGTCCTTCGCGTGACCCCAGTCGCGGAGGGC 577 Query 124613 ATCCAGGTTTCCGAGCTCGA------TTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 | | ||| ||||| || | ||||| | || | | | ||||| || Sbjct 578 GTTGACGTTGCCGAGGGAGAGGTCCTTCTGCTTGCCATATTTCATGCGCACCGCCGCACG 637 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 | | ||| |||||| || || ||||| ||| |||||||||||||| || Sbjct 638 GACC---ACCTTTTTCGTCACGAAGGTGGCGCCGCGGCGCGGGGACTCGTGGTTGAAGAG 694 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||||| | ||| ||||| ||||| | || |||||||| || ||||| ||||| Sbjct 695 GATGCCGTTCGTCGCGAACATGCCGTAGGCTTCCCGGTAGTTGACGGTAATCCAGTACCC 754 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGT 124846 | ||||| | ||| | |||||||| || |||||||| || || || || || | Sbjct 755 GTACAGCTTCGCGACGGCGTAGGGGCTGCGCGGGTAGAAGGGCGTCTTCTCCGACTGCGG 814 Query 124847 AGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAA--TTTT 124904 | ||| | || | | ||| || ||||||||||| ||| | | || Sbjct 815 CACCTCCTGCACGAGGCCGTAGAGCTCGCTCGTGGAGGCCTGATAGAACTTGCACGTCTT 874 Query 124905 GAAATAGAATTCGTTTGA-CGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCAC 124963 | | || | || | || ||||| || || | || | || || || |||||||| | Sbjct 875 G---TCGAGTCCGCTCGACCGAATCGCATCGAGGAGCTTCAGCGTGCCGATGGCGTCGGC 931 Query 124964 ATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTT 125023 | | |||| ||||| ||| ||||| || | ||||| |||||||| || | ||||| Sbjct 932 CTGGCCGGTGTACTCCGGCGTCTCAAAGGAGACCTTCACGTGGGACTGCGCGGCGAGGTT 991 Query 125024 GTACACCTCG 125033 |||||||||| Sbjct 992 GTACACCTCG 1001 >seq646 Length=7487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/296 (67%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 117301 GCGAG-TGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 ||||| |||| |||||||| | | || |||||||| || || |||||||||| Sbjct 2636 GCGAGGTGAAGATGTAACGCGCGGCGGCGTGGTCCTTGCCGCCCTGCAGCCGCGTACCGA 2577 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || || ||| || ||| || ||||||| |||||||||||| || |||| | Sbjct 2576 ACTGACCGTCGGGCCGCAGCAGGGGCACGTTGTTGCTGCCCACAAAGTTCTGTGCCATGC 2517 Query 117420 TGACAATCGTACCTTG--GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 || || || || | ||| | ||| || ||||| || || | ||||||| ||| Sbjct 2516 CAACGATGGT--CTGGATGAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGACAC 2459 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 |||||| | ||||| | || || || || || ||||| ||| ||||||| | | Sbjct 2458 GTAGCCGGAGAGCTGCACGACTTTAATAGCTTTGGTGAGGTTGCGCTTCAGGCAGGAAAA 2399 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 | | ||||||||| | ||||| | || || | || |||||||| |||| Sbjct 2398 GAGGATCTTGCGCTGGCCAGGCTTGAAGCCGTCGATCGCGCTCGGGATCGAGCGCT 2343 >seq1750 Length=4164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCC-ACCTGCCAGCCGCGTTCCAAAC 152085 |||||||||||| || || || ||| || |||| | |||| | |||| || ||| Sbjct 1810 CGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGCTGCCGAGCTGCT-GACGCGAGCCGAAC 1867 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 || || ||| |||| ||||||| ||||||| |||| ||| ||||| |||| || Sbjct 1868 TGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATTTTG 1927 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 || || || ||||||| | | || |||||||| |||| | ||| | |||||| Sbjct 1928 ACGATGGTCTCCTGCAGCGACACCTCGCCGTGGTGGAACGCGGAGACCTCGGAGATGTAG 1987 Query 152206 CCCGCCAACTGCGCCACCTT 152225 || | || |||||||||||| Sbjct 1988 CCGGACAGCTGCGCCACCTT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547156996434800