Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2387 102 5e-17 seq8454 100 2e-16 seq6152 98.7 6e-16 seq990 96.9 2e-15 seq70 93.3 3e-14 seq5997 91.5 9e-14 >seq2387 Length=3272 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| || || || ||||||||| ||||| || || | Sbjct 332 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 273 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 272 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 213 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||||| Sbjct 212 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCA 155 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| | ||||| || ||||| | ||| ||||| || |||||||| Sbjct 154 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 106 >seq8454 Length=528 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 301 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 242 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 241 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 182 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 181 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 124 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| | ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 123 ACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 73 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 528 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 469 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 468 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 409 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||||| Sbjct 408 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCA 351 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| | ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 350 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 301 >seq6152 Length=1087 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 251 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 192 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 191 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 132 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||||| Sbjct 131 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCA 74 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| | ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 73 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 24 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 1043 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 984 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 983 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 924 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 923 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 866 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| | ||||| || ||||| | ||| ||||| || |||||||| Sbjct 865 ACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 816 >seq990 Length=6061 Score = 96.9 bits (106), Expect = 2e-15 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||| | || || || |||||| || ||||| || || | Sbjct 716 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 657 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 656 AGTGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 597 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||| | Sbjct 596 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCGA 539 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTAT 34717 | || | || ||||| || ||||| | ||| ||||| || |||||||| ||| ||| | Sbjct 538 CCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTTGTGTGTTT 479 Query 34718 G 34718 | Sbjct 478 G 478 >seq70 Length=16190 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || || || |||||| || ||||| || || | || || || | Sbjct 16188 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 16129 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || || || ||||| || || | ||||| ||||||||||| | ||||||||| Sbjct 16128 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 16069 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTA 34669 || |||| || | || ||| | || ||||| |||| |||||| |||| | | Sbjct 16068 TCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCACCTCCAGCGCGA 16011 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || ||||| | ||| ||||| || |||||||| Sbjct 16010 TCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 15974 >seq5997 Length=1133 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||| | || || || |||||| || ||||| || || | Sbjct 594 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 535 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 534 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 475 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||| | Sbjct 474 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCGA 417 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || | || ||||| || ||||| | ||| ||||| || |||||||| ||| Sbjct 416 CCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTTG 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314696512673858