Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8454 107 2e-18 seq6152 105 6e-18 seq2387 105 6e-18 seq70 96.9 3e-15 seq5997 89.7 4e-13 seq990 89.7 4e-13 >seq8454 Length=528 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 70 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGC 129 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 130 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 189 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || |||| || | || | | || || Sbjct 190 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 249 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 250 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCAT 303 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 298 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGC 357 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 358 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 417 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || |||| || | || | | || || Sbjct 418 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 477 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||||||||| | || |||| |||| |||| || || Sbjct 478 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 528 >seq6152 Length=1087 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || || |||||||||||| | || | || || ||||| || Sbjct 813 GCTATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCG 872 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 873 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 932 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || |||| || | || | | || ||| Sbjct 933 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 992 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 993 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCAT 1045 Score = 104 bits (114), Expect = 2e-17 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 21 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGC 80 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 81 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 140 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || |||| || | || | | || || Sbjct 141 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 200 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223 |||||| || ||||||||||| | || |||| |||| |||| || || |||| || Sbjct 201 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG--TAACTAA 258 Query 27224 C 27224 | Sbjct 259 C 259 >seq2387 Length=3272 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || || |||||||||||| | || | || || ||||| || Sbjct 103 GCTATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCG 162 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 163 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 222 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || |||| || | || | | || ||| Sbjct 223 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 282 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||||| | || |||| |||| |||| || || || Sbjct 283 AACATCCAAAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGTAT 335 >seq70 Length=16190 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || || |||||||||||| | || | || || ||||| || Sbjct 15971 GCTATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCG 16030 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 16031 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 16090 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || |||| || | || | | || ||| Sbjct 16091 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 16150 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| || ||||||||||| | || |||| |||| Sbjct 16151 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 16188 >seq5997 Length=1133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || | || || || || || | Sbjct 368 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 427 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || || || Sbjct 428 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 487 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | || | | || |||||| Sbjct 488 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 547 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 548 ATCCAGAAGGAGTCGAC 564 >seq990 Length=6061 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || | || || || || || | Sbjct 490 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 549 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || || || Sbjct 550 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 609 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | || | | || |||||| Sbjct 610 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACACTCGCGGACTACAAC 669 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 670 ATCCAGAAGGAGTCGAC 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434871504923520