Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3593 105 6e-18 >seq3593 Length=2243 Score = 105 bits (116), Expect = 6e-18 Identities = 480/757 (63%), Gaps = 17/757 (2%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||| | || ||| | || |||||| ||| |||| ||| | ||||||| ||| Sbjct 285 GGGAAGCGGCGCGGCACCCGCGTCAGCTGCTCCCGCAGCCCCTCCACGTGGTTCTTGTAA 344 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | || || || || | || ||||| ||||| || || | ||| | | | ||| Sbjct 345 ACGTGGGCGTCGCCGAGGGTGTGCACGAGCTCGCCGGGTTGGAGCCCGGTGGCCTTCGCG 404 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 || | | || || | ||||| || |||||||||||||| || | |||||||| Sbjct 405 ATGAGGATGGTCAGGAAGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGCCCATGTCG 464 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA---TTCGCG---ACGTAGAATTGG 6739 | || || || ||| |||| ||||||| || | | |||||||| || Sbjct 465 CAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTTGTGTTCACGTAGAACTGC 524 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 | |||| ||||||||| |||||||||||| || | |||||||||||| Sbjct 525 CCGAGGAGGTGGCACGGCGGGAGCGCCATCTTGTCCAGCGCGGCGGGGTTCCACGCGGTG 584 Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859 | | || || | ||| | |||||| | || || |||| | | || | |||| Sbjct 585 AAGAGGAGCCGGCGGTCGTTCGGGTTCGACCGCAGCGTCTCGACGATGCGCTTGATCTGG 644 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA----TACTCCGCCCCAAAGTG 6915 || | || | || |||| | |||| | || ||||| || || ||||| Sbjct 645 TCGACGCCTTTGCCATCGTAGTTC---TCGCGGGCG-GAGGTGTACTCGGCTCCGAAGTG 700 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG 6975 | ||||||||| ||||| || ||||| | ||| ||| | | || || || Sbjct 701 GCGCCACTGGAAGCCGTACACGGGGCCGAGGTCCATCTCGGCGTTTTCGGTGAGGCCGCG 760 Query 6976 CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAG 7035 |||| |||||| | || |||| |||||||||| | ||| ||| | | ||| Sbjct 761 GCTGTCGAGAAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGCACGCCCGCGTCGGCGAG 820 Query 7036 CTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCA 7095 | ||| | || || | || | || ||||| | ||||||||| || || ||| Sbjct 821 CAGCTTCGCGTCGGTCTCGCCGCGCAGAAACCAAATGAGCTCCTCGGAGACCCCTCGCCA 880 Query 7096 GTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTATCGGGCCTG 7152 | | || || ||||||||||||||||| | | | | || ||| | | || ||| Sbjct 881 GAAGACGCGCTTCGTCGTCAGCAGCGGCAGCTGGTTGTCGCGCAGGGAGAAGCGCATCTG 940 Query 7153 TGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCT 7212 | ||||||| | || || ||| |||||| |||||| ||||| | ||| | | | Sbjct 941 AGCGCCGAACTGGCTGATCGTGCCCACCCCGGTGCGGTCCTCCTTCACGATGCCGTGCGT 1000 Query 7213 GAGGATCCGCGCCACCTGATACAGATACTGCCACTCC 7249 |||||| || | | | | ||| |||||| |||| Sbjct 1001 GAGGATGCGGTCGATAAGCTGCAGGTACTGCTTCTCC 1037 Score = 105 bits (116), Expect = 6e-18 Identities = 480/757 (63%), Gaps = 17/757 (2%) Strand=Plus/Minus Query 34096 GGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGA 34155 |||| |||||| ||| | | | | || ||||||| | | ||| | ||||| ||| Sbjct 1037 GGAGAAGCAGTACCTGCAGCTTATCGACCGCATCCTCACGCACGGCATCGTGAAGGAGGA 978 Query 34156 CCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215 ||| |||||| ||| || || | ||||||| | ||| || | | ||| || | Sbjct 977 CCGCACCGGGGTGGGCACGATCAGCCAGTTCGGCGCTCAGATGCGCTTCTCCCTGCGCGA 918 Query 34216 CGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 | | | ||||||||||||||||| || || | |||| || || ||||||||| Sbjct 917 CAACCAGCTGCCGCTGCTGACGACGAAGCGCGTCTTCTGGCGAGGGGTCTCCGAGGAGCT 858 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 | ||||| || | || | || || | ||| |||| | | ||| ||| | || Sbjct 857 CATTTGGTTTCTGCGCGGCGAGACCGACGCGAAGCTGCTCGCCGACGCGGGCGTGCACAT 798 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||||| |||| || | |||||| |||| || || || | | || Sbjct 797 CTGGGACGACAACGGCAGCCGCGCCTTTCTCGACAGCCGCGGCCTCACCGAAAACGCCGA 738 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA----TC 34448 | ||| | ||||| || ||||| ||||||||| | ||||| || || ||||| || Sbjct 737 GATGGACCTCGGCCCCGTGTACGGCTTCCAGTGGCGCCACTTCGGAGCCGAGTACACCTC 678 Query 34449 GGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACA 34508 | |||| | |||| || | || | |||||| | || | | |||| | Sbjct 677 -CGCCCGCGA---GAACTACGATGGCAAAGGCGTCGACCAGATCAAGCGCATCGTCGAGA 622 Query 34509 CCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 | || | |||||| | ||| | || || | | |||||||||||| | | Sbjct 621 CGCTGCGGTCGAACCCGAACGACCGCCGGCTCCTCTTCACCGCGTGGAACCCCGCCGCGC 562 Query 34569 TCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAA-- 34623 | |||||||||||| ||||||||| |||| | || |||||||| | | || Sbjct 561 TGGACAAGATGGCGCTCCCGCCGTGCCACCTCCTCGGGCAGTTCTACGTGAACACAAACA 502 Query 34624 -TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGT 34682 ||||||| |||| ||| || || || | |||||||| | || ||||||| Sbjct 501 CGCAGGAGCTGAGCTGCATGCTGTACCAGCGCAGCTGCGACATGGGCCTCGGCGTGCCGT 442 Query 34683 TCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742 ||||||| || ||||| | || || | | ||||| | | | ||| | | Sbjct 441 TCAACATCGCCTCCTACGCCTTCCTGACCATCCTCATCGCGAAGGCCACCGGGCTCCAAC 382 Query 34743 CTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802 | || ||||| ||||| || | || || || || | ||| ||||||| | ||| ||| Sbjct 381 CCGGCGAGCTCGTGCACACCCTCGGCGACGCCCACGTTTACAAGAACCACGTGGAGGGGC 322 Query 34803 TCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 | ||| |||||| || | ||| || | ||||| Sbjct 321 TGCGGGAGCAGCTGACGCGGGTGCCGCGCCGCTTCCC 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448214066106720