Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2387 178 3e-39 seq5997 174 3e-38 seq990 174 3e-38 seq6152 172 1e-37 seq8454 170 4e-37 seq70 161 2e-34 seq4029 132 1e-25 seq1750 89.7 1e-12 >seq2387 Length=3272 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | ||| || ||||||||||||||||| || Sbjct 333 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCCGC 274 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 273 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 214 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 213 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 154 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 153 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 106 >seq5997 Length=1133 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || ||||| || || || || | ||| || || |||||||||||||| || Sbjct 595 ACCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 536 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 535 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 476 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 475 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGAC 416 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||||||| || |||| ||||| ||||| |||||||| || Sbjct 415 CTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 365 >seq990 Length=6061 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 717 ACCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 658 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 657 GAGTGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 598 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 597 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGAC 538 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||||||| || |||| ||||| ||||| |||||||| || Sbjct 537 CTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 487 >seq6152 Length=1087 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 252 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 193 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 192 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 133 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 132 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 73 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 72 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 25 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1042 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 983 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 982 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 923 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 922 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 863 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 862 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 816 >seq8454 Length=528 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 300 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 241 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 240 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 181 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 180 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 121 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 120 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 74 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 528 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 469 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 468 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 409 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 408 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 349 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 348 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 302 >seq70 Length=16190 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 282883 GGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGC 282942 |||| || ||||| || | ||| || || |||||||||||||| || |||||||||| Sbjct 16190 GGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGC 16131 Query 282943 CATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCT 283002 | ||||| || || || ||||| ||||||| || || ||||| ||| || ||||||| Sbjct 16130 CCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCT 16071 Query 283003 TGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGA 283062 |||| |||||||| || || ||| | ||||| ||||| || || || || || | || Sbjct 16070 TGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGA 16011 Query 283063 TCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| || |||| ||||| ||||| |||||||| Sbjct 16010 TCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 15974 >seq4029 Length=1979 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||||| |||||||| | || ||||| ||||||||||| || || ||| Sbjct 1249 GAGAAGGAGTTCATCTGCGACGCGCTGCCGGTGCGTCTGATCGGCATGAACGCCGAGCTC 1308 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| ||||| || || || | ||||| |||| || |||||| Sbjct 1309 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTGTCGCTCGGCCTCGAGAAG 1368 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || ||||||| ||||||||||| || |||||| | || || ||| || || || Sbjct 1369 CACTACAACTCCACGAACCCCTTCGACTTCATGGAGATGATCTCGCTCACCGGCAAGACC 1428 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||||||| ||| ||| |||| || || ||||| Sbjct 1429 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGC 1466 >seq1750 Length=4164 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCT-GGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAA 273835 |||||||| ||||| | ||| | || ||||| |||| ||| | | ||| || || Sbjct 1808 TTCGTGAAGATGTAGCGCGGCGCG-GCGTGGTCGCTGCCGAGCTGCTGACGCGAGCCGAA 1866 Query 273836 CTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 ||| ||||| |||| ||| ||| |||||||||| ||| | | | ||| ||||| || Sbjct 1867 CTGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATTTT 1926 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 ||||| ||| |||| || || |||||||||||||| Sbjct 1927 GACGATGGTCTCCTGCAGCGACACCTCGCCGTGGTG 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046623513729404