Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq20180 123 3e-23 >seq20180 Length=1155 Score = 123 bits (136), Expect = 3e-23 Identities = 303/454 (67%), Gaps = 13/454 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | ||||| || | ||| ||||| || || || Sbjct 672 AGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 613 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| ||||| || || ||||||| |||||| | |||| || || || |||||| Sbjct 612 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 553 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || || | ||||| || | | ||||| || ||| | | || | Sbjct 552 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAA-CTGCTGC--TG 496 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | | | |||| | ||| |||| | || || || || ||| Sbjct 495 CGGATCCA---CCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATG 439 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | |||| || || |||| |||| | || |||||||| | ||| | | Sbjct 438 GCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 379 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || | |||||| ||||| ||||| || || |||||||| || ||||| Sbjct 378 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 319 Query 16556 GCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || |||||||||| || | || || | |||||||||||| ||| || || |||| Sbjct 318 GGTACTTGTACTTCC--GTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCAC 261 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| ||||| ||||||| | |||||| || || Sbjct 260 TTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511241676179080