Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20180 129 7e-25 seq12610 109 7e-19 >seq20180 Length=1155 Score = 129 bits (142), Expect = 7e-25 Identities = 356/533 (67%), Gaps = 12/533 (2%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 618 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 560 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 559 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 501 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 500 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 441 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 440 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 381 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||||| ||| |||||||| || || || |||||||| || | | Sbjct 380 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 323 Query 24482 CT-CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 || ||||| | |||||||| | || || | || | || || ||| ||||| | Sbjct 322 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 264 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 |||| || ||||| ||||||| || || || ||||| | || || || | | | Sbjct 263 CACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCT 204 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-C 24659 | | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| | Sbjct 203 TCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTC 145 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 || || | || ||| | |||||||| ||||| || | || ||||| || || Sbjct 144 TCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 92 >seq12610 Length=6403 Score = 109 bits (120), Expect = 7e-19 Identities = 295/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 2839 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 2780 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 2779 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 2720 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || | |||||| |||||| || || ||||| |||| | | || || || Sbjct 2719 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 2660 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || |||||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 2659 TCCACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 2600 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 54297 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 2599 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 2543 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 2542 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 2483 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 2482 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 2423 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGG 54447 | | ||||| ||||| ||||| || || Sbjct 2422 AAAAGGTGTTCCGGCATTGAATAATGTCGG 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593521077951120