Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20180 235 6e-57 seq15901 172 6e-38 seq3911 172 6e-38 seq15897 170 2e-37 seq15893 170 2e-37 seq15894 159 4e-34 seq18697 149 6e-31 seq15896 82.4 8e-11 >seq20180 Length=1155 Score = 235 bits (260), Expect = 6e-57 Identities = 429/623 (69%), Gaps = 5/623 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||| |||| ||||| || ||| | |||||| || || || | |||| || Sbjct 59 GAACCGCTTTTGCGTGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTACCATGAT 118 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAG-GCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| | |||||| | |||||| || | | |||||| || ||||| | || | Sbjct 119 ATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGATTT 177 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || ||| | ||||||||| ||||||| ||| || |||||||| Sbjct 178 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTTATCAAGCA 237 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||||||| || || ||||| || || || || || ||||| |||| |||| || Sbjct 238 CGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGGTT 297 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||| || || || | |||| ||| ||||||||||| || ||||| ||||| || Sbjct 298 CATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGA 357 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||||| || ||||||| || ||| || | || |||||| | | ||||||| Sbjct 358 GAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAGGA 417 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| ||| ||||| ||||||| ||| || |||||| || | | |||||| | || Sbjct 418 GAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAAAGGCCAACTG 477 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| | || |||||| | |||| || || || | ||| ||||| || ||||| || Sbjct 478 GGCGATTCGGTGGATCCGCAGCAG-CAGTTCG--TTTGCCGAACGCCTTGTTGCCTTTGC 534 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 ||| || || || | |||||||| ||| ||| || | || ||||| ||||| || Sbjct 535 GGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAGCG 594 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || || |||||||| ||||| ||||| || || |||||||| | || || || |||| Sbjct 595 TGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCA 654 Query 117175 TTGCGACTTTGCCTGTTTGCTGT 117197 |||||||| || || ||| Sbjct 655 CACGGACTTTGCGTGCCTGTTGT 677 >seq15901 Length=812 Score = 172 bits (190), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 236 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 177 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 176 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 118 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 117 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 58 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 57 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 9 Score = 129 bits (142), Expect = 6e-25 Identities = 107/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || |||||||| || |||||||||| || || |||| ||| ||||| |||||||| ||| Sbjct 812 AAGGAGGGCATTCCGCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 753 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 | ||||| ||| ||||||||||||||||||||| |||||||||| || ||| ||||| Sbjct 752 GGTCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGC 693 Query 40906 TTGAGGGGCGG 40916 || | ||||| Sbjct 692 CTGCGCGGCGG 682 >seq3911 Length=608 Score = 172 bits (190), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 352 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 411 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 412 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 470 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 471 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 530 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 531 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 579 >seq15897 Length=564 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 388 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 329 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 328 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 270 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 269 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 210 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 209 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 162 >seq15893 Length=595 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 585 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 526 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 525 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 467 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 466 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 407 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 406 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 359 >seq15894 Length=465 Score = 159 bits (176), Expect = 4e-34 Identities = 175/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 443 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 384 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 383 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 325 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||||| | || ||||| ||| |||||||| Sbjct 324 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGTC--CGGCCGCACGCTCGCAGACTACAA 267 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 266 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 218 >seq18697 Length=8154 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||| || || || |||||||| || ||| | |||| || || ||| | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||| || |||| ||| Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| ||| ||||||||| Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 7607 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||||||||| || ||| ||||| || | || || Sbjct 7608 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 7654 >seq15896 Length=580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 ||||| |||| ||||| ||| ||||||||||||||||||||| |||||||||| || Sbjct 580 CTGGAGGACGGCCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCCACGCTGCACCTT 521 Query 40897 GTGTTGCGCTTGAGGGGCGG 40916 ||| ||||| || | ||||| Sbjct 520 GTGCTGCGCCTGCGCGGCGG 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515045191155440