Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq15901 122 7e-23 seq15897 122 7e-23 seq15893 122 7e-23 seq3911 122 7e-23 seq18697 111 1e-19 seq15894 111 1e-19 >seq15901 Length=812 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 33 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTG 92 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 93 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 152 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | | |||||||||||||| Sbjct 153 CGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGT 212 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||||||||| || |||||| Sbjct 213 CAGTGTCTTCACAAATATCTGCATG 237 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || |||| |||| ||||| || Sbjct 705 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCGTCCTCCAGCTG 764 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTT 45240 || || ||||| |||| ||||| ||||| || || | |||||||| Sbjct 765 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTT 812 >seq15897 Length=564 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 185 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTG 244 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 245 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 304 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | | |||||||||||||| Sbjct 305 CGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGT 364 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 365 CAGTGTCTTCACGAAGATCTGCATG 389 >seq15893 Length=595 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 382 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTG 441 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 442 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 501 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | | |||||||||||||| Sbjct 502 CGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGT 561 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||||||||| || |||||| Sbjct 562 CAGTGTCTTCACAAATATCTGCATG 586 >seq3911 Length=608 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 555 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTG 496 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 495 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 436 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | | |||||||||||||| Sbjct 435 CGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGT 376 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 375 CAGTGTCTTCACGAAGATCTGCATG 351 >seq18697 Length=8154 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 7631 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTG 7572 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| || || || || | |||||||||||| || || Sbjct 7571 CTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 7512 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||| || | | |||||||||||||| Sbjct 7511 CGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCACTTCGAGCGCGATCGTCTTGCCCGT 7452 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||| | ||||| ||||| Sbjct 7451 CAGTGTCTTCGCGAAGATCTGCAT 7428 >seq15894 Length=465 Score = 111 bits (122), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||||||| ||||||||| ||||||||||| || ||| || | |||| || Sbjct 242 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCG--GACCAGCTG 299 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 300 CTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 359 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||||| | | |||||||||||||| Sbjct 360 CGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGT 419 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||||||||| || |||||| Sbjct 420 CAGTGTCTTCACAAATATCTGCATG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394945104082399