Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20180 224 9e-54 seq15897 100 3e-16 seq3911 100 3e-16 seq15901 95.1 1e-14 seq15893 95.1 1e-14 seq15894 89.7 5e-13 seq18697 84.2 2e-11 >seq20180 Length=1155 Score = 224 bits (248), Expect = 9e-54 Identities = 614/925 (66%), Gaps = 34/925 (4%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCC---CCGTAGATTTGTCATGTTTCCGATTGAATAT 57563 || ||||| ||||||| |||||||| |||| | || || |||||||| | || Sbjct 56 GAAGAACCGCTTTTGCGTGAGAATCCTGACCGT---TACGTGATCTTTCCGATCAAGTAC 112 Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGA-AGCATCGTTTTGGACCGTCGAAGAAGT 57622 | || || ||||| | |||||| | || || |||| | | | |||| || || ||| | Sbjct 113 CATGATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCT-GGACGGTGGAGGAAAT 171 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATT--TT 57680 || || | || || || ||||| | || ||| | ||||| || || Sbjct 172 CGATTTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAG--GGGAGAAGTTCTTT 229 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740 || || |||||| ||||||| || |||||| ||||| ||||| ||||| ||| | Sbjct 230 ATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGG-C 288 Query 57741 GAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 | | | |||| | ||||| ||||| |||||| | | ||||| ||||| || || Sbjct 289 GCA-GCGGTTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGA 347 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | |||||||| ||||| ||||| |||| || ||| | || | ||||||||| | | | Sbjct 348 TTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAG 407 Query 57859 ACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | || ||||| | |||| |||| || ||||| || ||| || | Sbjct 408 ATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAA 467 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 |||| | ||| | || ||||| ||| || | ||| ||||| | || Sbjct 468 AGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGTTC---GTTTGCCGAACGCCTTG 524 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || || || |||||||| |||||||| ||| ||| || | || ||| Sbjct 525 TTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGC 584 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| || || ||||||||||| |||||||| || || || | || ||||| || | Sbjct 585 TAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATG 644 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACT----CTCACATTGTCAATAA---A 58151 | || | || || || ||||||||||| ||||| || ||||||| || || | Sbjct 645 AAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACT-ACATTGTGAACAAGCTA 703 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 || ||| || || || || ||||| | ||||| | || || |||||| Sbjct 704 CCAACG---GAGCGTATTCGCGAGATTATTTGCAGTGCGGTGGACATTGAGCGTGAGTTC 760 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || || || | || ||| |||| || |||||| ||||||||||| | |||| Sbjct 761 ATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGACGTAC 820 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAACA 58329 || |||||||| || || | || || | | ||| | | | |||||||| |||||| Sbjct 821 ATAGAGTTTGTGGCGGATCGGCTGCTGGTGGCACT--TGGCAACGAGCGTCACTACAACT 878 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | || || || || || |||||| | ||||||| || |||| ||||||||||| || | Sbjct 879 CAAAGAACCCATTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTCTTTG 938 Query 58390 aaaaaaaaGTTAGCGAATATCAAAA 58414 | || || || | || || ||||| Sbjct 939 AGAAGAAGGTCGGTGAGTACCAAAA 963 >seq15897 Length=564 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || ||| | Sbjct 392 AACCATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATC 333 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || || || ||||||||| ||| | ||||| || Sbjct 332 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 273 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| |||| ||| Sbjct 272 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 233 >seq3911 Length=608 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || ||| | Sbjct 348 AACCATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATC 407 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || || || ||||||||| ||| | ||||| || Sbjct 408 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 467 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| |||| ||| Sbjct 468 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 507 >seq15901 Length=812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| |||||| | |||| || ||| | Sbjct 240 AACCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATC 181 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || || || ||||||||| ||| | ||||| || Sbjct 180 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 121 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| |||| ||| Sbjct 120 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 81 >seq15893 Length=595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| |||||| | |||| || ||| | Sbjct 586 CATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAG 527 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || || || ||||||||| ||| | ||||| ||||| Sbjct 526 CGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 467 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||||||||| ||| |||| ||| Sbjct 466 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 430 >seq15894 Length=465 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| |||||| | |||| || ||| | Sbjct 444 CATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAG 385 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || || || ||||||||| ||| | ||||| ||||| Sbjct 384 CGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 325 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||||| || || ||||||||||| ||| ||| Sbjct 324 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGG 293 >seq18697 Length=8154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||| ||||| ||||| ||||| |||||| | |||| || || | | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | ||||| || ||| Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||||||||| ||| |||| ||| Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 7583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445615847970480