Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20180 131 2e-25 seq12610 107 2e-18 >seq20180 Length=1155 Score = 131 bits (144), Expect = 2e-25 Identities = 354/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || ||| Sbjct 618 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 559 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 558 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 500 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 499 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 440 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33869 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 439 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 380 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 379 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 322 Query 33930 TC-GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || |||| | || ||||| || || || | || | || || ||| |||||||| Sbjct 321 TCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 263 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 ||| || ||||| ||||||| || || || ||||| | || || || | | || Sbjct 262 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTT 203 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CT 34107 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| || Sbjct 202 CTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCT 144 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 | || | || ||| | |||||||| ||||| || | ||| || || || || Sbjct 143 CGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 92 >seq12610 Length=6403 Score = 107 bits (118), Expect = 2e-18 Identities = 294/448 (66%), Gaps = 2/448 (0%) Strand=Plus/Minus Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 2839 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 2780 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||| ||| | ||||| || ||||| || || || || ||||| || || | | || Sbjct 2779 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 2720 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 2719 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 2660 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 || |||||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 2659 TCCACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 2600 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA-CGAATATTACTAA 63537 |||||||| ||||| || || | || ||| |||| || || ||||| | Sbjct 2599 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAG-CTCCCGGAACAGCGGATATTGTGCA 2541 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 | || || || || || |||| || | |||||| | || || || |||| Sbjct 2540 CGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCAT 2481 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 | || || || || || || || |||| || |||||||| | |||||| || Sbjct 2480 AAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAA 2421 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGG 63685 || ||||| ||||| ||||| || || Sbjct 2420 AAGGTGTTCCGGCATTGAATAATGTCGG 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629604886978320