Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12610 109 7e-19 >seq12610 Length=6403 Score = 109 bits (120), Expect = 7e-19 Identities = 280/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 72078 || || |||| ||| || || ||||||||||||||||| ||| | ||||| | ||| Sbjct 2814 TTCACACGTTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGTGCCCTA 2755 Query 72079 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 72138 || || || || || ||||| || || | | || || | |||||| |||||| Sbjct 2754 TGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAA 2695 Query 72139 GGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 72198 || || ||||| ||||| | | || || || || |||||||||| || | | Sbjct 2694 GGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTTTCCACCCCCCTGATCTACATAGCGA 2635 Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || |||||||| |||| | | ||| || | || || || || ||||| ||||| Sbjct 2634 GCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCA 2575 Query 72259 GAGATATAGCTTCC---ACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCC 72315 | || ||||| || || | || |||||| | | || || || || || Sbjct 2574 GCAATGTAGCTCCCGGAACAG---CGGATATTGTGCACGTGGACGCCAATGCCACCAGCT 2518 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 |||| || | |||||| | || || |||||||| || ||||| ||||| || ||| Sbjct 2517 GATTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCC 2458 Query 72376 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 72435 |||| || |||||||| | |||||| || | ||||| ||||| ||||| Sbjct 2457 CGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAAT 2398 Query 72436 GTAGG 72440 || || Sbjct 2397 GTCGG 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670912531124440