Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15901 113 1e-19 seq15893 113 1e-19 seq15894 96.9 8e-15 >seq15901 Length=812 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 40 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 99 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 100 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 159 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 160 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 219 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 220 TTCACAAATATCTGCAT 236 >seq15893 Length=595 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 389 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 448 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 449 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 508 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 509 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 568 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 569 TTCACAAATATCTGCAT 585 >seq15894 Length=465 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||| | || || || ||| Sbjct 249 GTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGGA--CCAGCTGCTTGCCA 306 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 307 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 366 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| | ||| ||||| || | || ||||| || || ||||| Sbjct 367 ACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTC 426 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 427 TTCACAAATATCTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150999807822452