Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20180 131 2e-25 seq12610 105 8e-18 >seq20180 Length=1155 Score = 131 bits (144), Expect = 2e-25 Identities = 271/396 (68%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || || Sbjct 618 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 559 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33473 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 558 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 500 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 499 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 440 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33591 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 439 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 380 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 379 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 322 Query 33652 T-CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 | ||||| | |||||||| || || || | ||||| || || ||| ||||| || Sbjct 321 TCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 263 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||| || ||||| ||||||| || || || ||||| Sbjct 262 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 227 >seq12610 Length=6403 Score = 105 bits (116), Expect = 8e-18 Identities = 294/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 2839 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 2780 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 2779 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 2720 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 2719 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 2660 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 || |||||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 2659 TCCACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 2600 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 63484 |||||||| ||||| || || | || ||||| || || | || ||||| Sbjct 2599 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 2543 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | | || || || || || |||| || | |||||| | || || || || Sbjct 2542 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 2483 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||| || ||||| || || || || |||| || |||||||| | |||||| | Sbjct 2482 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 2423 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63634 | | ||||| ||||| ||||| || || Sbjct 2422 AAAAGGTGTTCCGGCATTGAATAATGTCGG 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622736807370040