Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq20180 109 1e-18 seq25308 98.7 3e-15 >seq20180 Length=1155 Score = 109 bits (120), Expect = 1e-18 Identities = 310/474 (65%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 22478 GTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 |||| || || ||||| ||| |||| ||||| | ||| ||||| ||||||||||| || Sbjct 504 GTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCT 563 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 | || ||||| | || |||||||| || |||| | ||||| || || ||||| | Sbjct 564 CCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTA 623 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 |||| | || || ||||| || | || || || |||||||| || | || || | Sbjct 624 ATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTA-CGAA 682 Query 22658 ATC-ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | | | || | | || || ||| || | | | || |||||| | ||| || Sbjct 683 AACTACATTGTGAACAAGCTACCAACGGAGCGTATTCGCGAGATTATTTGCAGTGCGGTG 742 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || |||| ||| || || || || | | || || | || | || || || || Sbjct 743 GACATTGAGCGTGAGTTCATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCA 802 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || | ||| || || || | ||||| || ||||| || | | |||| || | Sbjct 803 GATTTGATGTCGACGTACATAGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAAC 862 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | || || ||| || ||||| || | |||||| | || ||||| | ||| Sbjct 863 GAGCGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCACTGCAGGGA 922 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||| || || | || ||||| |||||||| |||||||| ||| Sbjct 923 AAGACAAACTTCTTTGAGAAGAAGGTCGGTGAGTACCAAAAGGCAGGTGTAATG 976 >seq25308 Length=7020 Score = 98.7 bits (108), Expect = 3e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78552 AATAAAGATACATCAGTGAATGAACAAAATAATTCATAGTTGCGAACCAGATACCACTAC 78611 |||||| ||||| | ||||| || | ||||||||||| || ||||| | |||||| Sbjct 1339 AATAAAAGTACATGATGGAATGTACGCAGTAATTCATAGTCGCAAACCACAGTCCACTAG 1398 Query 78612 CAATGCAAACGGAATATGCATGCCAACAATAAAGAAGAACCGTTAGATGATGATACCAAT 78671 |||| | | ||||||||||||||| | || | ||||| ||| |||||||||| Sbjct 1399 AAATGGTATATGCGTATGCATGCCAACAAAACAGCATCACCGTGGCATGGTGATACCAAT 1458 Query 78672 GAAGGAAAATTACTGGATTCTTACGAATCAGGAGAAAGAATGTATCTACAAGTTCAACAA 78731 | || ||||| ||||| ||||| ||| | ||||||| || || | | || || Sbjct 1459 GTAGAAAAATCACTGGTTTCTTCTGAAAGACAAGAAAGACCGTGTCGATCATCTCTGGAA 1518 Query 78732 TCTTGGAATAAATAAAG 78748 |||| ||| || |||| Sbjct 1519 TCTTAGAAAGAACAAAG 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302902403828858