Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20180 134 2e-26 seq12610 114 2e-20 >seq20180 Length=1155 Score = 134 bits (148), Expect = 2e-26 Identities = 357/533 (67%), Gaps = 12/533 (2%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 618 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 560 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | || || ||| | || Sbjct 559 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 501 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 500 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 441 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 32947 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 440 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 381 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||||| ||| |||||||| || || || ||||||||||| | | Sbjct 380 AGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 323 Query 33008 CT-CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 || ||||| | |||||||| || || || | || | || || ||| ||||| | Sbjct 322 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 264 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 |||| || ||||| ||||||| || || || ||||| | || || || | | | Sbjct 263 CACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCT 204 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-C 33185 | | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| | Sbjct 203 TCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTC 145 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 || || | || ||| | |||||||| ||||| || | || ||||| || || Sbjct 144 TCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 92 >seq12610 Length=6403 Score = 114 bits (126), Expect = 2e-20 Identities = 296/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| || | |||||| |||| ||| || || |||||||||||||| Sbjct 2839 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAG 2780 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 2779 AGCGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 2720 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 2719 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTT 2660 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || |||||||||| || | ||| |||||||| |||| | | ||| || | || Sbjct 2659 TCCACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 2600 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC---ACTGGCACGAATATTACT 63339 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 2599 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 2543 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 2542 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 2483 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 2482 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 2423 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | ||||| ||||| ||||| || || Sbjct 2422 AAAAGGTGTTCCGGCATTGAATAATGTCGG 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633417998712400