Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20180 172 6e-38 seq13766 87.8 2e-12 >seq20180 Length=1155 Score = 172 bits (190), Expect = 6e-38 Identities = 599/918 (65%), Gaps = 30/918 (3%) Strand=Plus/Minus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| ||||| |||||||| || || || || || |||||||| ||||||||||| | Sbjct 977 TCATTACACCTGCCTTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCT 918 Query 92849 CCAAAGATATCGAATTCACTA--GT-GATTGGATTCTTGGCGTTATAAT-ACTTTTCACC 92904 || || ||| | ||| || || || ||| ||||| | ||| || | || | | Sbjct 917 GCAGTGAGATC-ATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCT----C 863 Query 92905 GAT--CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | | ||| | || | | | ||| || ||||| ||||||||| ||||||||||| Sbjct 862 GTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATC 803 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 ||||| || || || || ||||| | | ||| | ||| || ||| || | Sbjct 802 TGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTC 743 Query 93022 AACGGC--TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || | | || | | | ||| || | ||||| | || | || | || Sbjct 742 CACCGCACTGCAAATAATCTCGCGAATACGCTCCG--TTGGTAGCTTGTTCACAATGTAG 685 Query 93080 TT---GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || ||||| | |||||||||||| || || || ||||| || || || || | ||| Sbjct 684 TTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCA 625 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || | || || | ||| || || ||||| ||||| || | | | || || Sbjct 624 TTACTGAACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCA-CAGAA 566 Query 93197 CTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--A 93253 | || ||||| || ||||||||||| || ||||| || |||| ||||||||||| | Sbjct 565 GGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGA 506 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | |||| |||||| | ||||| | ||| ||||||| || || || Sbjct 505 ACTGC-----TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGA 451 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||| || |||| || | | || ||| |||| |||| ||||| ||||| Sbjct 450 ATTGTCGAAATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCC 391 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | | || || || |||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 390 AACAGCACCGAGTATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAG 331 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 || | | |||| | || ||||| || | || | || || || || Sbjct 330 CAGCGCACCTCCGGTACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACA 271 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || ||||| ||| ||||| || |||| | ||||| ||||| ||||| | || Sbjct 270 ATTCCATCACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCG 211 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 || | ||| ||||| || | | || | | ||||| ||| || || |||| | | Sbjct 210 TTCATCTTCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGAT 152 Query 93614 GATGCT-TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 | |||| || |||| |||||| | | ||| || || || || | || ||||| || || Sbjct 151 GCTGCTCTCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCAC 92 Query 93673 AAAACGATTAGGGTTATC 93690 |||| | ||| || || Sbjct 91 GTAACGGTCAGGATTCTC 74 >seq13766 Length=2640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/67 (91%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || || ||| |||||||||||| Sbjct 1569 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTCTAGGG-GCGTGGGTTCGA 1512 Query 126333 ACCCCAC 126339 ||||||| Sbjct 1511 ACCCCAC 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556672727225560