Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12610 105 6e-18 seq15893 100 2e-16 seq15901 98.7 8e-16 seq15897 96.9 3e-15 seq3911 95.1 1e-14 seq18697 89.7 4e-13 seq15894 82.4 6e-11 >seq12610 Length=6403 Score = 105 bits (116), Expect = 6e-18 Identities = 308/467 (66%), Gaps = 8/467 (2%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 || ||||||||||| || || ||||| ||||| ||| | || || || |||||||| || Sbjct 4050 TCAACGGTAAATTTGATTGCATCCGCAGCCGGTTTGCTCCGTAAGTAATACATGCCCGTC 3991 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAAC--AATGCGTAGGTGGGTT 128899 || | || | || ||| | | ||| || | |||| | || | || ||| || Sbjct 3990 TTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGGCTG-GAAGTTGGATT 3932 Query 128900 GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCA 128959 | |||||| | ||| || |||||| |||||||| || ||| || || |||||| Sbjct 3931 TTC-CAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCCACGGTCCACAGCCA 3873 Query 128960 TACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTT 129019 | | || | || ||| || |||||||| || ||||| | | || | Sbjct 3872 TCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAGCTCCTTGAGGTCAT 3813 Query 129020 TTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCT 129079 |||| || | |||||| ||||| ||| |||| ||||| || | || ||||||| Sbjct 3812 TTGGAATGCCCCTAATGTTTTGCACTGAGCCATTGTAGGCAATGATCTGATTGCGCATCT 3753 Query 129080 GTTCGTTGTACAAATTCAGTTTGATCAAAT-CGTCGGTCAA-GTATTTGTTTATTACTTG 129137 |||||| ||| | | | || || | || | || ||| ||| ||||| | || | Sbjct 3752 CTTCGTTCCACAGACCCCGCTTAATGAGATCCATC--ACAAGGTACTTGTTAACCACAGG 3695 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 ||| ||||| || || || || ||||| || || ||| || |||||||| | || Sbjct 3694 AAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAATGGCTCAAAGCACTC 3635 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA 129244 |||||| || | ||| || | || | || |||||||| ||||| Sbjct 3634 ATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAGCCA 3588 >seq15893 Length=595 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| || | || || |||||| ||| | Sbjct 585 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 526 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 525 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 466 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 465 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 406 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||||||| ||| Sbjct 405 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGT 358 >seq15901 Length=812 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| || | || || |||||| ||| | Sbjct 236 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 177 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 176 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 117 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 116 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 57 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 56 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 10 >seq15897 Length=564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| || | || || |||||| ||| | Sbjct 388 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 329 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 328 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 269 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 268 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 209 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||||||| ||| Sbjct 208 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGT 161 >seq3911 Length=608 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| || | || || |||||| ||| | Sbjct 352 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 411 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 412 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 471 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 472 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 531 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 532 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 578 >seq18697 Length=8154 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || | || || | || || || ||| || | || |||||||| ||| | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 7607 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 7608 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 7654 >seq15894 Length=465 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| || | || || |||||| ||| | Sbjct 443 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 384 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 383 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 324 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC-ACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||| | || | |||||| || | || ||||| Sbjct 323 CAGCGCCTGATCTTCGCTGGCAAGCAGCT---GGTCCGGCCGCACGCTCGCAGACTACAA 267 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || ||||| | || | || |||| ||||||| || Sbjct 266 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419589786061735