Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20180 199 7e-46 seq12610 95.1 2e-14 >seq20180 Length=1155 Score = 199 bits (220), Expect = 7e-46 Identities = 572/866 (66%), Gaps = 13/866 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || |||| || |||||| | ||||||| | || || | || |||||| | Sbjct 103 GATCAAGTACCATGATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGGACGGT 162 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||| || || || || ||| ||| | ||||||| || || || || Sbjct 163 GGAGGAAATCGATTTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAA 222 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| || |||| || | ||||| ||||| ||||| ||| || || || ||||| Sbjct 223 GTTCTTTATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAA 282 Query 42464 CCTGGC-CACCAGGTTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||| || | ||||||||| || || | ||||| |||| ||||||||||||||| Sbjct 283 CCTGGCGCAGC-GGTTCATGACGGAAGTACAAGTAC-CGGAGGTGCGCTGCTTCTACGGG 340 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||||| || || || ||| | ||| | | |||||| Sbjct 341 TTCCAGATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTAC 400 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| | | ||| || | |||| | ||||| ||| || || |||||| Sbjct 401 ATCACAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATC 460 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 |||| ||||| |||||||| | |||||| || | | |||| | ||| Sbjct 461 CAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAG---CAGCAGTTCGTTTGCCGAA 517 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | || || |||||| | || || || || || ||||| || ||| ||||| | | Sbjct 518 CGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTG 577 Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||| ||| || ||| | ||||||||| || || ||| || ||||||||| Sbjct 578 TTCTGGCTAAAGAAGCGTGGTCT-GATGCCCGGGCTGACGTTCAGTAATGAACTCATCTC 636 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | || || || |||| | ||||||||| ||||| ||| | | | || | | | Sbjct 637 GCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAA 696 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAG-GCCGTGGAGATCGAGAAGG 42939 ||||| | | |||||| | || | || || | || || ||||| || ||| | Sbjct 697 CAAGCTACCAACGGAGCGTATTCGCGAGATTAT-TTGCAGTGCGGTGGACATTGAGCGTG 755 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | || | || ||| ||| | || |||||| || | |||| | Sbjct 756 AGTTCATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGA 815 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||| ||| || || || | || || ||| || ||| || || | |||| Sbjct 816 CGTACATAGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAACGAG-CGTCACTAC 874 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| | | ||| |||||||||||||| | ||||| || |||| ||||| ||||| Sbjct 875 AACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTC 934 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCA 43144 || |||||| |||| || ||||| Sbjct 935 TTTGAGAAGAAGGTCGGTGAGTACCA 960 >seq12610 Length=6403 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 ||||| ||||| ||||| |||| | | |||| ||| ||||||| | ||||||||||| Sbjct 3798 ATGTTTTGCACTGAGCCATTGTAGGCAATGATCTGATTGCGCATCTCTTCGTTCCACAGA 3739 Query 244058 CCCAAGCGCT---CCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 ||| |||| || || || |||| | |||| ||||| ||||||| || | Sbjct 3738 CCC---CGCTTAATGAGATCCATCACAAGGTACTTGTTAACCACAGGAAACTCACCACTC 3682 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 ||||| |||||| ||||| || | | | ||||| | || ||| |||| || ||| Sbjct 3681 AGCACTCGGCGCACGTAGATATTTGAGGTAAATGGCTCAAAGCACTCATTGTTCCCAAGT 3622 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGG 244203 ||||||| ||| ||||| ||||| || Sbjct 3621 ATCTGCGAAGTGGATGCAGTGGGCATTGG 3593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944020261239440