Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq15897 104 2e-17 seq15893 104 2e-17 seq15901 102 6e-17 seq3911 102 6e-17 seq18697 100 2e-16 seq15894 91.5 1e-13 >seq15897 Length=564 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 161 ACCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 220 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 221 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 280 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | ||| | | || | ||||| Sbjct 281 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCA 339 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 340 CCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 388 >seq15893 Length=595 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 358 ACCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 417 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 418 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 477 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | ||| | | || | ||||| Sbjct 478 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCA 536 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| |||||||| || ||||| Sbjct 537 CCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 585 >seq15901 Length=812 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 10 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 69 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 70 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 129 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||| | | ||| | | || | ||||| Sbjct 130 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCAC 188 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| |||||||| || ||||| Sbjct 189 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 681 ACCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 740 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 741 GAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 800 Query 34020 CACGCTCTCTTT 34031 | || ||| || Sbjct 801 AATGCCCTCCTT 812 >seq3911 Length=608 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 578 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 519 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 518 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 459 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||| | | ||| | | || | ||||| Sbjct 458 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCAC 400 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 399 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 352 >seq18697 Length=8154 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 7654 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 7595 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 7594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGGA 7535 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 7534 ATGCCCTCCTTGTCC 7520 >seq15894 Length=465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 219 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 278 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || || | ||| |||||||| || || |||||||||||||| ||| ||| Sbjct 279 AGCGTGCGGCCG--GACCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 336 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||| | | ||| | | || | ||||| Sbjct 337 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCAC 395 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| |||||||| || ||||| Sbjct 396 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396931649709238