Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15901 158 3e-33 seq15897 158 3e-33 seq15893 158 3e-33 seq3911 158 3e-33 seq18697 154 3e-32 seq15894 141 2e-28 >seq15901 Length=812 Score = 158 bits (174), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | |||| || || ||||| || |||| Sbjct 6 CATG-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 64 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||||||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 65 CTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 124 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| ||||| |||||||| || || | ||||| |||| Sbjct 125 GCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATT 184 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||| ||||||||| || ||||| ||||| || ||||||||||| Sbjct 185 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 236 >seq15897 Length=564 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || || | |||| || || ||||| || ||||| ||| Sbjct 162 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 221 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||| ||||| || || Sbjct 222 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 281 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||| ||||| || Sbjct 282 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACC 341 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||| || ||||| ||||| ||||| |||||||| Sbjct 342 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 388 >seq15893 Length=595 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || || | |||| || || ||||| || ||||| ||| Sbjct 359 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 418 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||| ||||| || || Sbjct 419 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 478 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||| ||||| || Sbjct 479 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACC 538 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||| || ||||| ||||| || ||||||||||| Sbjct 539 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 585 >seq3911 Length=608 Score = 158 bits (174), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | |||| || || ||||| || |||| Sbjct 582 CATG-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 524 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||||||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 523 CTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 464 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| ||||| |||||||| || || | ||||| |||| Sbjct 463 GCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATT 404 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||| ||||||||| || ||||| ||||| ||||| |||||||| Sbjct 403 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 352 >seq18697 Length=8154 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || || || | |||| || || ||||| || ||||| || Sbjct 7655 TCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 7596 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||||||| ||||| || | || || || ||||||||||| ||||| || || Sbjct 7595 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGG 7536 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| ||||| ||||| || || || | ||||| || || || Sbjct 7535 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCAC 7476 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||||||| || ||||| ||||| |||| |||||||| Sbjct 7475 TTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCGCGAAGATCTGCAT 7428 >seq15894 Length=465 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | |||| || || ||||| || |||| Sbjct 215 CATG-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 273 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||||||||| ||| | | || || || ||||||||||| ||||| || Sbjct 274 CTGCGAGCGTGCGGCCGGA--CCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 331 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| ||||| |||||||| || || | ||||| |||| Sbjct 332 GCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATT 391 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||| ||||||||| || ||||| ||||| || ||||||||||| Sbjct 392 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179246026133882