Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq12610 185 1e-41 seq20180 114 2e-20 >seq12610 Length=6403 Score = 185 bits (204), Expect = 1e-41 Identities = 666/1034 (64%), Gaps = 17/1034 (2%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 4006 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 3947 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 3946 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 3887 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 3886 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 3827 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | |||| ||| || || || ||||| | |||||| | | | || Sbjct 3826 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTG---TAGGCAAT 3770 Query 113842 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 3769 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 3710 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 3709 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 3650 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 3649 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 3591 Query 114018 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 3590 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 3531 Query 114078 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 | | | || | | | || ||||| ||||||||| || ||||| || | Sbjct 3530 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 3471 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || || |||| | | || || ||||| || ||||| | ||| |||||||| Sbjct 3470 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 3411 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 114254 | | || ||| || || || |||||||| |||||| | | | ||||| | | Sbjct 3410 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 3351 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 3350 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 3291 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 114371 | || |||| | || ||| | ||| ||| || |||||| || | || Sbjct 3290 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 3234 Query 114372 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 114431 |||| || | ||| |||||||| ||||||| || |||| |||| | | | || || Sbjct 3233 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAACCGCTGGTGAT 3174 Query 114432 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 114491 | || | |||| | || ||| | ||||| || || || || || || |||| Sbjct 3173 CGTAAATTTTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 3114 Query 114492 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 114551 | | | |||||| | || ||||||||||| || || || | || || | ||| | Sbjct 3113 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 3054 Query 114552 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 114611 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 3053 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 2994 Query 114612 GCGTCCCCGTCTCC 114625 | ||||| ||| Sbjct 2993 GGACGCCCGTTTCC 2980 >seq20180 Length=1155 Score = 114 bits (126), Expect = 2e-20 Identities = 240/351 (68%), Gaps = 15/351 (4%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| |||||||||||||| ||| ||| || Sbjct 666 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 607 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| | |||||| || || || || ||||| || Sbjct 606 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 547 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| || || || ||||| || | || | || | Sbjct 546 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGC----TGCTGCGGAT 491 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 126283 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | || Sbjct 490 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 431 Query 126284 -AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 | | | ||||||| || | |||| |||||||| |||| | || || ||||| Sbjct 430 CATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 374 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 126391 ||| || || | ||| |||||| ||| || ||||||| ||||| Sbjct 373 TTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597151851288520