Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15901 100 3e-16 seq20180 96.9 3e-15 seq15893 96.9 3e-15 seq3911 96.9 3e-15 seq15897 95.1 1e-14 seq18697 84.2 2e-11 >seq15901 Length=812 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 9 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 68 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 69 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 128 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | || ||||| Sbjct 129 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCAC 188 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTT 138619 ||||| || | ||| || || ||||| || || ||||| |||||||||| || Sbjct 189 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATGGTTT 241 >seq20180 Length=1155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 246/362 (68%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| ||||||||||| || || | || ||||| || ||||| ||||||||||| Sbjct 602 ATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGAC 661 Query 52542 TTTGCGTGCCTCTACTAC-AAGACGCGCGTGACCGAAAAAT-TGGATTCGGACACGATCC 52599 ||||||||||| | ||| || || || ||| || | |||| || | Sbjct 662 TTTGCGTGCCTGTTGTACGAAAACTACATTGT--GAACAAGCTACCAACGGAGCGTATTC 719 Query 52600 T-GAGCATGTTCAAGGAG-GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCC 52657 ||| | || | || ||||||| || || ||||| | | | | | || Sbjct 720 GCGAGATTATTT--GCAGTGCGGTGGACATTGAGCGTGAGTTCATCTGTGACTCCATCCC 777 Query 52658 GGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA-GTACATCGAGTTTGTGGCGG 52716 || ||||||||| |||||||| | | |||| ||| |||||| ||||||||||||| Sbjct 778 TGTGCGGCTGCTGGGGATGAACGCAGATTTGATGT-CGACGTACATAGAGTTTGTGGCGG 836 Query 52717 ATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT-ACTTCAACGCTCGCAATCCGTTTGAG 52775 |||| ||| ||||| || |||| | | || ||| |||| | || || || || Sbjct 837 ATCGGCTGCTGGTGGCACT-TGGCAACGAGCGTCACTACAACTCAAAGAACCCATTCGAC 895 Query 52776 TTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAG 52835 |||||| | | || || || |||| ||||| ||||| || |||||| ||||| ||| Sbjct 896 TTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTCTTTGAGAAGAAGGTCGGTGAG 955 Query 52836 TA 52837 || Sbjct 956 TA 957 >seq15893 Length=595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 359 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 418 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 419 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 478 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| | || |||||| Sbjct 479 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACC 538 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | ||| || || ||||| || || ||||| ||||||||| Sbjct 539 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 586 >seq3911 Length=608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 579 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 520 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 519 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 460 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | || ||||| Sbjct 459 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCAC 400 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTT 138619 ||||| || | ||| || || ||||| || || || || |||||||||| || Sbjct 399 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGTTT 347 >seq15897 Length=564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 162 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 221 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 222 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 281 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| | || |||||| Sbjct 282 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACC 341 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTT 138619 |||| || | ||| || || ||||| || || || || |||||||||| || Sbjct 342 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGTTT 393 >seq18697 Length=8154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||| || || || || | Sbjct 7621 GACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCG 7562 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || ||||| || || || || ||||| ||| || || | | Sbjct 7561 AAGATCAGGCGCTGCTGTTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACT 7502 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | |||||||| |||| || | ||| || || ||||| || || Sbjct 7501 TTCTCAATGGTGTCGCTGGACTCCACTTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTC 7442 Query 138601 ACAAAAATCTGCAT 138614 | || |||||||| Sbjct 7441 GCGAAGATCTGCAT 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496094793577680