Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12610 178 2e-39 seq20180 129 7e-25 >seq12610 Length=6403 Score = 178 bits (196), Expect = 2e-39 Identities = 655/1015 (65%), Gaps = 17/1015 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 4006 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 3947 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 3946 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 3887 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 3886 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 3827 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | |||| ||| || || || ||||| | |||||| || | | | || Sbjct 3826 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCAT-TG--TAGGCAAT 3770 Query 115803 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | || ||| || | ||| ||||| ||| |||||||| ||| |||| Sbjct 3769 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 3710 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || ||| ||||||||| || || | || ||||| || | || | Sbjct 3709 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 3650 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 3649 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 3591 Query 115979 CCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 116038 ||| || | || || | || | | || || | ||| | || ||||| | Sbjct 3590 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 3531 Query 116039 CGTAGTTG-AGCTT--TGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | ||| | | | |||||||| ||||||||| || ||||| |||| Sbjct 3530 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 3471 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 3470 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 3411 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | || ||| || || || |||||||| |||||| | | | ||||| | | Sbjct 3410 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 3351 Query 116216 AATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 116275 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 3350 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 3291 Query 116276 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTAT 116332 | || |||| | || ||| | || | ||| || |||||| || | || Sbjct 3290 TGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATAATGGTTACGAT 3234 Query 116333 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 116392 |||| || | ||| |||||||| ||||||| || |||| |||| | | | || || Sbjct 3233 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAACCGCTGGTGAT 3174 Query 116393 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 116452 | || | |||| | || ||| | ||||| || || || || || || |||| Sbjct 3173 CGTAAATTTTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 3114 Query 116453 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 116512 | | | |||||| | || ||||||||||| || || || | || || | ||| | Sbjct 3113 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 3054 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCAT 116567 || || | ||||| |||||||| || |||||| || |||||||| ||||| Sbjct 3053 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCAT 2999 >seq20180 Length=1155 Score = 129 bits (142), Expect = 7e-25 Identities = 430/655 (66%), Gaps = 42/655 (6%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| |||||| |||||||||||||| || | || ||| | ||||| Sbjct 958 GTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCAT 899 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || ||||||||||||||||| | | |||| |||| || Sbjct 898 AAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTG-----CCAAGTGCCACCAGC 844 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 843 AGCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGC 784 Query 127406 TT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 ||| |||| | ||| |||||||| | |||||||||||| || | | || Sbjct 783 CGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAAT 725 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAA---AGTCTTG----AAGAGTTC 127515 || ||||| ||| ||| ||| | || ||| || || || Sbjct 724 CTCGCGAATACGCTCCGTT---GGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGG-- 670 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| ||||| || ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 669 CAC-GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 611 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 610 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAA 551 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGTAT 127694 || || ||||| ||| || |||| || || |||||||| || | | || | || Sbjct 550 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT 491 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-T 127753 |||| |||||||| | |||||||||| ||| || || | ||| || || | Sbjct 490 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 435 Query 127754 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 || | | | ||||||| || | |||| |||||||| |||| | || || | Sbjct 434 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGT 378 Query 127812 ATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 127864 ||||||| || || | ||| |||||| ||| || ||||||| ||||| Sbjct 377 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613299995612040