Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq15901 145 2e-29 seq15893 145 2e-29 seq15897 141 2e-28 seq3911 141 2e-28 seq15894 129 1e-24 seq18697 123 6e-23 >seq15901 Length=812 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 16 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 75 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| ||| || Sbjct 76 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 135 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | ||| || || | | Sbjct 136 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 195 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || |||||||| || || Sbjct 196 GCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTG 233 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 688 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 747 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| || |||||||| || |||||||||||||| Sbjct 748 CGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 797 >seq15893 Length=595 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 365 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 424 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| ||| || Sbjct 425 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 484 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | ||| || || | | Sbjct 485 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 544 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || |||||||| || || Sbjct 545 GCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTG 582 >seq15897 Length=564 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 168 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 227 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| ||| || Sbjct 228 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 287 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | ||| || || | | Sbjct 288 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 347 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || ||||| || || || Sbjct 348 GCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTG 385 >seq3911 Length=608 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 572 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 513 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||||||||| ||| || Sbjct 512 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 453 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | ||| || || | | Sbjct 452 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 393 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || ||||| || || || Sbjct 392 GCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTG 355 >seq15894 Length=465 Score = 129 bits (142), Expect = 1e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 225 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 284 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||| || |||||||| || |||||||||||||| ||| || Sbjct 285 CGGCCGGA--CCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 342 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | ||| || || | | Sbjct 343 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 402 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || |||||||| || || Sbjct 403 GCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTG 440 >seq18697 Length=8154 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || || |||||||| |||| ||||||||| || | || Sbjct 7648 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 7589 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || |||||||| ||||| ||| || Sbjct 7588 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGGAATGCCC 7529 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | |||||| | | || || || | | Sbjct 7528 TCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCACTTCGAGC 7469 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| ||||| || || ||| | || || || Sbjct 7468 GCGATCGTCTTGCCCGTCAGTGTCTTCGCGAAGATCTG 7431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178513479815273