Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20180 223 3e-53 seq15901 140 3e-28 seq3911 140 3e-28 seq15897 138 1e-27 seq15893 138 1e-27 seq15894 129 6e-25 seq18697 127 2e-24 >seq20180 Length=1155 Score = 223 bits (246), Expect = 3e-53 Identities = 603/913 (66%), Gaps = 16/913 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || ||||| |||||||| || || || ||||||| || || || | Sbjct 963 TTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATT 904 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTG---CTTGGTGCCGATCAGGTCGACG 132720 |||||| || || ||||| || ||||||||| || | |||| | | | || Sbjct 903 TCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTGCCAA---GTGCCACC 847 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||||| || ||||| ||||| ||||| |||||| || || | |||||| Sbjct 846 AGCAGCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGC 787 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || ||||| || | | || || || |||| ||| | ||||| | | Sbjct 786 AGCCGCACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATA 727 Query 132841 ATTTCCCTAACGCGCGCCGC-GCTCGGCCGTTGCACCAAATGCTT---GAACATCAAGCA 132896 || || | || ||| ||| | | | ||| ||| | | || | ||| || ||| Sbjct 726 ATCTCGCGAATACGCTCCGTTGGTAGCTTGTT-CACAATGTAGTTTTCGTACAACAGGCA 668 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||| |||||||| || || | || |||||||| || ||||| |||| || Sbjct 667 CGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCC 608 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||| || || || || || ||||| || | || ||| ||| |||||||| | Sbjct 607 GGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAAT 548 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 || || || ||||| || || || ||||| ||| | |||| || || |||| ||| Sbjct 547 ACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAA-CTGCT--GCTGCGGAT 491 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| || | |||||| | |||||||| | || |||||| || || ||||||| ||| Sbjct 490 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 431 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 || ||| ||||| |||| | ||| || || | || ||| || |||| Sbjct 430 CATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGTTTC 371 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||| || |||||||| ||||| || || || ||||| ||||| ||| |||| || || Sbjct 370 CGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACTTG 311 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 ||||| ||| |||| |||| || || || || || || || ||||| || Sbjct 310 TACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAAA 251 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCG 133376 || ||||||||||||||||| || ||| ||||||| ||||||||| Sbjct 250 GAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAGTCCGC 191 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC-CTCGGCTTTTTTGT 133435 | ||| || || || | ||||| || |||| | | | || |||||||| |||| Sbjct 190 CAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCTCGGCTTCCTTGT 132 Query 133436 ACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGC 133495 || | |||| || || || | || ||||| ||||| | ||| || || || | Sbjct 131 ACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCACGTAACGGTCAGGATTCTCAC 72 Query 133496 GCAACAGCGGCTC 133508 |||| ||||| || Sbjct 71 GCAAAAGCGGTTC 59 >seq15901 Length=812 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || |||||||| || ||| | |||| || || ||| | Sbjct 236 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 177 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 176 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 118 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 117 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 58 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| | |||||||| || | |||||| Sbjct 57 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 9 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38340 AAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGAC 38399 || ||||| ||||| | ||||| ||||| || || | ||| ||||| |||||||| ||| Sbjct 812 AAGGAGGGCATTCCGCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 753 Query 38400 GAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||| ||| |||||||||||||| ||||| | |||||||| | |||||||| Sbjct 752 GGTCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGC 693 Query 38460 TTGAGAGGCGG 38470 || | ||||| Sbjct 692 CTGCGCGGCGG 682 >seq3911 Length=608 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||| | |||| || || ||| | Sbjct 352 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 411 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 412 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 470 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 471 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 530 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| | |||||||| || | |||||| Sbjct 531 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 579 >seq15897 Length=564 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||| | |||| || || ||| | Sbjct 388 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 329 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 328 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 270 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 269 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 210 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| | |||||||| || | ||||| Sbjct 209 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 162 >seq15893 Length=595 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || |||||||| || ||| | |||| || || ||| | Sbjct 585 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 526 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 525 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 467 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 466 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAA 407 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| | |||||||| || | ||||| Sbjct 406 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 359 >seq15894 Length=465 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || |||||||| || ||| | |||| || || ||| | Sbjct 443 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 384 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 383 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 325 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||||| | || ||||| ||| |||||||| Sbjct 324 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGTC--CGGCCGCACGCTCGCAGACTACAA 267 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| | |||||||| || | |||||| Sbjct 266 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 218 >seq18697 Length=8154 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||| || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| ||||| | || || Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| ||||||||| Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 7607 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | |||||||| | |||||||| Sbjct 7608 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCG 7642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500003872888960