Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12610 134 2e-26 >seq12610 Length=6403 Score = 134 bits (148), Expect = 2e-26 Identities = 654/1024 (64%), Gaps = 35/1024 (3%) Strand=Plus/Plus Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||||||||| ||||| ||||||| || ||||| |||||| | || || |||||| Sbjct 2999 ATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAAG 3058 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| || ||||| || | || | |||| | ||||| || ||||| Sbjct 3059 TGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCGCGGTGTGC 3118 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 ||||| || || || || || || | ||||||| |||| ||| | | ||| | Sbjct 3119 AACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGAGAAAAATTTACGATCAC 3178 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | | | || || ||||||| |||||||||||| || || |||| || ||| | Sbjct 3179 CAGCGGTTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGATCGT 3238 Query 112563 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || ||| || || ||| | || | || || | | ||||| ||||| Sbjct 3239 AACCATTATCCTGTACCCGAGTC-GCGCCGAA--GCAACGAGCTCAATCGTCCCATTGGA 3295 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCCGA 112678 | || || ||||| | ||||| || || || || || || |||| | | | Sbjct 3296 ATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTAC-CATTCACATGCCA 3354 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 || |||| | | |||| ||| ||||| || || || ||| ||| | ||||| Sbjct 3355 GGAGGCGAGGACTTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGAGGC 3414 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 ||| ||| | || || || || || || |||| |||| || ||| || || Sbjct 3415 GAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGCGTC 3474 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAG-CTTCACTACGACT 112854 ||||| ||| || |||||| |||||| || || ||| ||| | | || | Sbjct 3475 GCAAGGCCAGCTACAGTTTGATCTGTGGG-AGCAGAAACCGCGAAGTGGCCGTTGGGATT 3533 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGC 112912 |||| || | ||| | || || | | | | || | || | | || || | |||| Sbjct 3534 GGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGA--ATTCGTTACTTTTGGC 3591 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCT 112971 |||||||| || || ||||| | || || |||||| || ||||| |||||||| || | Sbjct 3592 TCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCCAT 3650 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 || | || ||||| || | || || || |||||| | || |||||| Sbjct 3651 TTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGT 3710 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTCA 113088 | || ||| || |||| || ||||| ||| | | || ||| || | ||| Sbjct 3711 ACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGATCA 3770 Query 113089 TGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 | | | || ||| || | ||||| ||| || |||||| |||| | ||| | Sbjct 3771 TTGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAAATGACCTCAAGGA 3825 Query 113147 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | |||| || || ||||| || | ||||||| |||| || ||||| | || || Sbjct 3826 GCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGACCG 3885 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC 113266 ||| ||||||||||| |||||||| |||||||||| |||||| |||||| || Sbjct 3886 TGGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---TTC 3942 Query 113267 CA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 || |||| | || |||||| | | ||| | || || || ||||| ||||| Sbjct 3943 CAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATGTA 4002 Query 113324 TTAC 113327 |||| Sbjct 4003 TTAC 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620532752013680