Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12610 147 3e-30 seq16913 84.2 3e-11 seq6285 84.2 3e-11 seq6284 84.2 3e-11 >seq12610 Length=6403 Score = 147 bits (162), Expect = 3e-30 Identities = 673/1058 (64%), Gaps = 21/1058 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTT-- 109471 |||||||| ||||| || || ||| | ||| || | | ||||| || | || | Sbjct 4005 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 3946 Query 109472 -TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 ||||| || ||| | |||| ||| | |||| ||| |||||| ||||| Sbjct 3945 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTG 3889 Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 ||||| || | ||||| ||||||| | ||| || | ||| ||||| ||| ||| Sbjct 3888 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 3829 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC--AGCCTTCA 109648 | | ||||| |||| |||||| || |||||||| | |||||| || | | Sbjct 3828 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTGTAGGCA--A 3771 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || ||| |||||||| ||| ||||| ||| ||||||| ||||| | Sbjct 3770 TGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGT 3711 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 |||||| ||||| ||| |||||| || || || | |||||| || | || Sbjct 3710 ACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAA 3651 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | || || || ||||||||||| || || || || | |||||| || |||||||| |||| Sbjct 3650 ATGGCTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 3591 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAAT 109888 ||| || | || || | || | || | | |||| || ||| ||||||| Sbjct 3590 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 3531 Query 109889 CATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAG 109948 | |||| ||||| || || | ||||||| ||| || || || | | Sbjct 3530 CCCAACGGCCACTTCGCG--GTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTGCG 3474 Query 109949 CAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAG 110008 || ||| || || | | | || | |||||| || || || | || | Sbjct 3473 ACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCG 3414 Query 110009 CCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTT 110068 |||| | || | | || || || |||||||||| |||||| | | ||| | Sbjct 3413 CCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCT 3354 Query 110069 CACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGA 110127 || ||| || || || || || ||||| ||||| | || || || || | Sbjct 3353 GGCATGTGAATGGTAG-CCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATT 3295 Query 110128 CCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGTAAAAGTTG 110184 |||||||| |||| | ||| || ||| | || ||| || ||| ||| Sbjct 3294 CCAATGGGACGATTGAGCTCGTT---GCTTCGGCGCGACTCGGGTACAGGATAATGGTTA 3238 Query 110185 CGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCG 110244 || ||||| || ||||| ||||| || || ||| | ||||||| |||| | | | Sbjct 3237 CGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAACCGCTGG 3178 Query 110245 TAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTG 110304 | |||| | |||| ||||||||| ||| | || || ||||| || ||||| ||| Sbjct 3177 TGATCGTAAATTTTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTG 3118 Query 110305 CACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTC 110364 ||||| | || || | || || || | ||| || || || | ||| || | | Sbjct 3117 CACACCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCAC 3058 Query 110365 TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 || ||||| || | ||||||||||| ||||| ||| ||||| ||||| || |||||| Sbjct 3057 TTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATG 2998 Query 110425 TATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 | ||| || |||||| |||| | | ||| ||||| Sbjct 2997 AAAGGGACGCCCGTTTCCATCTGCAATTCGAGTATGGC 2960 Score = 89.7 bits (98), Expect = 6e-13 Identities = 240/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 |||| |||| | |||||||| || ||| ||| | || | ||||| || | || ||| Sbjct 2656 ACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCC 2597 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC---GAATGTCGTGGAT 110879 | || || |||||||| || ||| | | | || || | || | ||| | Sbjct 2596 GTTTGACTGGCCATTTGTCCCAGCAAT---GTAGCTCCCGGAACAGCGGATATTGTGCAC 2540 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATA 110939 || | ||||| ||||| || | ||||| || || || | | | |||| |||| Sbjct 2539 GTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCATA 2480 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACG 110999 ||| || ||||| || || |||||| ||||| |||||| ||| |||||| Sbjct 2479 AATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAA 2420 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTT 111059 ||| ||||| |||||||| | ||| ||||| ||||| |||| || | ||||| | Sbjct 2419 AGGTGTTCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTACCCAAGAGACATATG 2360 Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 || ||||| || | || | ||| | |||||||||||||| || || |||| Sbjct 2359 GTCATATGTCTCCTTTACGCGCTCCATATCCTCACCGTGAATACCAAGAGCGACGCGCAA 2300 Query 111120 GAACAT 111125 ||||| Sbjct 2299 AAACAT 2294 >seq16913 Length=716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 136709 CGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768 || ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| Sbjct 281 CGCTCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGA 222 Query 136769 GCCCCGTTGGGAACAGCTTTT 136789 ||| ||||||| || ||||| Sbjct 221 CCCCTGTTGGGAGCA-CTTTT 202 >seq6285 Length=16576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 370 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 311 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 310 CTGTTGGGAGCA-CTTTT 294 >seq6284 Length=1461 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 1163 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 1104 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 1103 CTGTTGGGAGCA-CTTTT 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588777080718200