Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12610 145 9e-30 seq205 86.0 7e-12 >seq12610 Length=6403 Score = 145 bits (160), Expect = 9e-30 Identities = 688/1074 (64%), Gaps = 43/1074 (4%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCT-- 105653 || ||||| || ||||| || || ||| ||| || | | ||||| || | |||| Sbjct 4005 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 3946 Query 105654 -TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGA 105712 |||| |||||| |||||| || ||||||| ||||||||||| |||||||| Sbjct 3945 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTG 3889 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 ||||| | | ||||| || |||| ||||||| | || |||||||| || || Sbjct 3888 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 3829 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACC 105832 || | ||||| |||| ||| || | || ||||| | ||| || | | | Sbjct 3828 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGA---GCCATTGTAGGCA 3772 Query 105833 ATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 |||| ||| ||| || | | ||| ||||| ||| ||||||| | || || Sbjct 3771 ATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGG 3712 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | |||||| || | |||||| || || || | || ||||| || | || Sbjct 3711 TACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTA 3652 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 | || |||||||| ||||| || |||||| || || | ||||| || || |||||||| Sbjct 3651 AATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGG 3593 Query 106009 TGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 |||| | || || || || | || ||| | | || || | ||| | ||||| Sbjct 3592 AGCCAAAAGTAACGA--ATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCC 3535 Query 106067 CAGTCGTAGTTG-AGCTT---GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 || || | | ||| |||||| | ||||||| |||||| || ||| ||||| Sbjct 3534 CAATCCCAACGGCCACTTCGCGGTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTG 3476 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 |||| |||| || |||| | |||||| || | |||| || | ||| ||| Sbjct 3475 CGACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCT 3416 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC-ATCTCCTTGGCT- 106240 |||||||| | ||| || || |||||||| ||| ||||| | |||| | || Sbjct 3415 CGCCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTC 3356 Query 106241 ---TCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAAC 106296 ||| ||||| ||||| ||| || ||||| ||||| | ||||| || Sbjct 3355 CTGGCATGTGAAT------GGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCAC 3302 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATA 106353 || | ||||| || | | || || ||| |||| | ||| || ||||| Sbjct 3301 GCCAATTCCAATGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATA 3245 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413 | || | || || ||||| || |||||||| || ||||| || |||| |||| | Sbjct 3244 ATGGTTACGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAA 3185 Query 106414 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 106473 | | ||| || | |||| | || ||| | |||||| || || || || Sbjct 3184 CCGCTGGTGATCGTAAATTTTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGC 3125 Query 106474 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTT 106533 | ||||| || || |||||| | ||| ||||||| ||| ||||| || | ||| Sbjct 3124 AAGGTTGCACACCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTT 3065 Query 106534 GGAACTCTTAATCGTCCCCAA-ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 || | ||| || | | |||| |||||| || || || ||| || || ||||||| Sbjct 3064 CGAGCACTTGAT-GACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGT 3006 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 | |||||| | || ||||| ||| |||| | | ||| || || ||||| Sbjct 3005 AAAGCATGAAAGGGACGCCCGTTTCCATCTGCAATTCGAGTATGGCAAACCACA 2952 >seq205 Length=3064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 1455 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 1514 Query 136226 GGTAGGA 136232 ||||||| Sbjct 1515 GGTAGGA 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589781541359560