Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq15901 84.2 1e-11 seq15897 84.2 1e-11 seq15893 84.2 1e-11 seq3911 84.2 1e-11 >seq15901 Length=812 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || || || || Sbjct 46 TCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 105 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 106 ATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 165 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || |||| | || || || ||||| || ||||||||| Sbjct 166 TCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACA 225 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 226 AATATCTGCAT 236 >seq15897 Length=564 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || || || || Sbjct 198 TCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 257 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 258 ATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 317 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || |||| | || || || ||||| || |||||||| Sbjct 318 TCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACG 377 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 378 AAGATCTGCAT 388 >seq15893 Length=595 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || || || || Sbjct 395 TCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 454 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 455 ATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 514 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || |||| | || || || ||||| || ||||||||| Sbjct 515 TCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACA 574 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 575 AATATCTGCAT 585 >seq3911 Length=608 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || || || || Sbjct 542 TCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 483 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 482 ATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 423 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || |||| | || || || ||||| || |||||||| Sbjct 422 TCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACG 363 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 362 AAGATCTGCAT 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324526700083032