Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq15901 89.7 4e-13 seq3911 86.0 5e-12 >seq15901 Length=812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||| | || |||||| ||| || || || ||||| || | Sbjct 9 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 68 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || ||||| ||||| || |||| || Sbjct 69 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 128 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTC 48715 || |||||||||||| ||||| || || | | || | | ||| | || Sbjct 129 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCAATGGTGTCGCTG--GATTC 185 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||||| | || ||||| || ||||||| || || ||||| |||||||| || Sbjct 186 CACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATGGT 239 >seq3911 Length=608 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||| | || |||||| ||| || || || ||||| || | Sbjct 579 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 520 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || ||||| ||||| || |||| || Sbjct 519 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 460 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTC 48715 || |||||||||||| ||||| || || | | || | | ||| | || Sbjct 459 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCAATGGTGTCGCTG--GATTC 403 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||||| | || ||||| || ||||||| || || || || |||||||| || Sbjct 402 CACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGT 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380812159510137