Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20180 120 6e-22 seq12610 95.1 2e-14 >seq20180 Length=1155 Score = 120 bits (132), Expect = 6e-22 Identities = 375/571 (66%), Gaps = 11/571 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||| ||||||| | || | | | | |||||| | || || || ||| Sbjct 116 GATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGGACGGTGGAGGAAATCGAT 175 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || ||| ||| | |||| | | | ||| ||| || ||| ||||| Sbjct 176 TTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTTATCAAG 235 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG-AGAG 25652 ||||| |||| |||||||| || |||||| || ||| ||||| ||| ||| || | Sbjct 236 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTG-GCGCAGCG 294 Query 25653 ATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 |||| | |||||| || |||| ||||| || |||||||| |||||||| |||| Sbjct 295 GTTCATGACGGAAGTACAAGTACC-GGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCA 353 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 | || || || || || || || | ||| || |||||||| ||||| | Sbjct 354 TTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGG 413 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCAT--CGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || |||| ||||| ||| || || || ||||| ||| ||||| Sbjct 414 AGGAGAAGGACCGCATGTTGCACGCCATTTCGA-CA-ATTCCGTGCATCCAGAAAAAGGC 471 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || ||||||| |||| ||| | |||||| ||| || || || || Sbjct 472 CAACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTTCGTTTGCCGAACGCCTTGTTGC 528 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| || ||||| || || || || ||| || || || | |||||||| || Sbjct 529 CTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAA 588 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||||||||| || || || |||||| | || || || Sbjct 589 GAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGG 648 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||| || ||||| |||||| | ||| Sbjct 649 CTTGCACACGGACTTTGCGTGCCTGTTGTAC 679 >seq12610 Length=6403 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 221687 TCCACAAAAGCGTTTAGG-GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCC-TTGT 221744 |||||||| |||| | | |||| | ||| ||||| ||||| || || || ||| ||| Sbjct 3153 TCCACAAA-GCGTGGAAGTGCAATGGAGGCAAGGTTGCACACCGCGACTTCATCCCTTGA 3095 Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 || |||||| ||| |||||||| || ||||| |||||||||| || | | || | Sbjct 3094 TG-TATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCT 3036 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT-AAAGGGACCGCCAGTCTCCAGC 221863 |||| || || || || ||||||||||| ||||| ||||||| |||| || |||| | Sbjct 3035 GATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAGGGA-CGCCCGTTTCCATC 2977 Query 221864 TG 221865 || Sbjct 2976 TG 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928531094279360