Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq12610 95.1 6e-15 >seq12610 Length=6403 Score = 95.1 bits (104), Expect = 6e-15 Identities = 278/426 (65%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 ||||| |||| || |||||||| | || ||||| ||||||| || || ||||| Sbjct 2805 TCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGTGCCCTATGGTCTTCC 2746 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 || || ||| || || | | | |||| ||| ||||| ||||| || ||||| Sbjct 2745 TTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAAGGCTCTAAG 2686 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || || ||||| ||||| | ||||| || || |||||||| || | || || | | Sbjct 2685 TAAATGGCAAAGGCGCCTTTACGCTTTCCACCCCCCTGATCTACATAGCGAGCCGTGTTA 2626 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 || |||| | ||| || || | ||| |||| || ||||| | | ||| | | Sbjct 2625 TTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAG 2566 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATA 26230 || | | | |||| ||| | || | || || |||||||| |||| ||| Sbjct 2565 CTCCCGGAACAGCGGATATTGTGCACGTGGACGCCAATGCCACCAGCTGATTTACTTATA 2506 Query 26231 GCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 | || || | || || |||||| |||| || | || || || | ||| | | Sbjct 2505 ACGGCGCATTGCTTCAA-TGTATCATAAATCCCCTCAATACTGTCCTCCCGCATGGCAAC 2447 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | |||||||||| | ||| | | || |||||| | ||| |||||||||||||| || Sbjct 2446 AAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAATGTCGGTGTGGC 2387 Query 26350 ATGAGT 26355 ||| || Sbjct 2386 ATGTGT 2381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252956675430425