Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq12610 181 1e-40 >seq12610 Length=6403 Score = 181 bits (200), Expect = 1e-40 Identities = 930/1456 (64%), Gaps = 58/1456 (4%) Strand=Plus/Plus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 ||||||||||| || ||| | || || | || ||||| || || | || ||| || Sbjct 2576 GGGACAAATGGCCAGTCAAACGGACTTGTACCGATGCTACGTGTTTGGAATAACACGGCT 2635 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 ||||||||| |||| | ||| | || || || || | || | ||||| || || Sbjct 2636 CGCTATGTAGATCAGGGGGGTGGAAAGCGTAAAGGCGCCTTTGCCATTTACTTAGAGCCT 2695 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||||| ||||| | | || ||| || | || | | ||| | ||||| Sbjct 2696 TGGCATGGTGATATATTTAATTTTCTTCTTTTGAAGAAAAATACG-GGTAAGGAAGACCA 2754 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | || ||||| | |||| | || |||||||| ||||| |||||| | || || || Sbjct 2755 TAGGGCACGAGATTTGTTTTACGCTCTTTGGATTCCTGACCTATTCATGGAACGTGT-GA 2813 Query 75739 GGAGGGTGGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCG 75796 ||| | | ||| ||| | || | || | | ||| ||||| || ||| || Sbjct 2814 AGAGCGGAGGCAAGTGGACGCTGATGGACCCGCATACGGCGCCAGGACTGAGTGACTGCT 2873 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 ||| ||| || ||| || | ||| ||||||| |||| | ||| | | Sbjct 2874 ATGG-TGATGATTTTAAAAAGTTATACGAGGGGTATGAAAGGGAGAATCGAGGCGTCAAG 2932 Query 75857 ACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 || || | ||| | || | ||| || || ||| ||| |||| ||| || || Sbjct 2933 ACCGTGCAGGCC--CAATCCCTGTGGTTTGCCATACTCGAATTGCAGATGGAAACGGGCG 2990 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | |||||||||||||| || |||||| || || || |||||| | ||| Sbjct 2991 TCCCTTTCATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAG 3050 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 |||||| |||| || |||||||| || ||| ||||||| ||| | |||||| | Sbjct 3051 TCATCAAGTGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCG 3110 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | || ||||| | || || || || |||||| | ||| || | |||| | || Sbjct 3111 CGGTGTGCAACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGAGAAAAATTT 3170 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 ||| | | | |||| |||| || ||||| || |||||||| || ||||| | Sbjct 3171 ACGATCACCAGCGGTTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGA 3230 Query 76155 TTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 | || | || |||||| || ||| | |||| ||| || || | | | Sbjct 3231 TCGATCGTAACCATTATCCTGTACCCGAGTC-GCGCCGAAGC--AACGAGCTCAATCGTC 3287 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTT 76270 | ||||| | || || ||||| | ||||| ||||| || ||| ||||| Sbjct 3288 CCATTGGAATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTACC----- 3342 Query 76271 GATTCAGATGA----AGCCAAGGAGAT-GAATGCTCGTATCTTTGAAACCATGTATCACG 76325 ||||| ||| || | |||| | ||||| ||| |||||||| || || ||| Sbjct 3343 -ATTCACATGCCAGGAGGCGAGGACTTTGAATGAAGATATTTTTGAAACGATTTACTACG 3401 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | |||||||||| ||| | || |||| | || |||||| | |||| | Sbjct 3402 GTGCTGTGGAGGCGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAG 3461 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC---AAGC 76442 | ||||||||| ||||| ||| ||||||||| ||||||| | |||||| ||| Sbjct 3462 GCAGTCCCGCGTCGCAAGGCCAGCTACAGTTTGATCTGTGGGA-GCAGAAACCGCGAAGT 3520 Query 76443 T-CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | || ||||||| | ||| | || || | | | | || | || || | Sbjct 3521 GGCCGTTGGGATTGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGAAT--T 3578 Query 76502 CTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAA 76558 | || | |||| |||||||| || || ||||| | || || |||||| || ||||| Sbjct 3579 CGTTACTTTTGGCTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAG 3637 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 |||||||| |||| || |||| |||||| || | || || ||||||||| Sbjct 3638 TGCTTTGAGCCATTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCT 3697 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 | || |||||| |||| || | || |||| ||| ||||| ||| | | || ||| Sbjct 3698 GTGGTTAACAAGTACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATG 3757 Query 76679 AAGGATC---TCATGG--TGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAG 76733 ||| |||| | | || ||| || | ||||| || | || ||| Sbjct 3758 CGCAATCAGATCATTGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAA 3812 Query 76734 ATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACA 76793 |||| ||||| | || || || |||||||| || | ||| ||| |||| || | Sbjct 3813 ATGACCTCAAGGAGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGA 3872 Query 76794 TGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAA 76853 |||| | || ||||| ||||||||||| |||||||| |||||||||| |||||| Sbjct 3873 TGGCTGTGGACCGTGGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAA 3932 Query 76854 GTCCAACGATGTCCA---AGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910 |||||| |||| |||| | || ||||| | | || ||| ||| || || | Sbjct 3933 ATCCAAC---TTCCAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAA 3989 Query 76911 AAACCGGAATGTACTA 76926 | || || ||||| || Sbjct 3990 AGACGGGCATGTATTA 4005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596368116074720