Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12610 145 2e-29 >seq12610 Length=6403 Score = 145 bits (160), Expect = 2e-29 Identities = 559/869 (64%), Gaps = 17/869 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTC 155644 |||| || || || || || ||||| | || | | | | | ||||| |||| |||||| Sbjct 3134 CAATGGAGGCAAGGTTGCACACCGC-GACTTCATCCCTT-GATGTATACTCTATAATCTC 3077 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 ||| ||||| || | ||||||| || | ||||||||| || ||||||| |||||| Sbjct 3076 TGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACA 3017 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 || |||||||| || ||| | ||| || || |||||||| || || || | Sbjct 3016 TGCGTCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCAATTCGAGTATGGCAAA 2957 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| ||| |||| | | |||| | || ||| ||||| | || Sbjct 2956 CCACAGGGATTGGGCCTGCACGGTCTTGACGCCTCGATTCTCCCTTTCATACCCCTCGTA 2897 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 | | || |||| ||||| || || ||||||||||| || | ||| ||| | Sbjct 2896 TAACTTTTTAAAATCATCACCATAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTCCAT 2837 Query 155885 CAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||||| ||| || | | || ||||| ||||| |||| ||| ||||| || Sbjct 2836 CAGCGTCCAC-TTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAGAG 2778 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT---CTTCCGTAGCTCTA 156000 | || || | || | |||| | || || | || ||| |||| || | Sbjct 2777 CGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAG----A 2722 Query 156001 AGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 |||| | |||||| ||| ||||| | || || ||||| || || | | Sbjct 2721 AGAAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGC 2662 Query 156060 TTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 || |||||| ||||||||||| ||||| || ||||| | |||| |||||| || | | Sbjct 2661 TTTCCACCCCCCTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACA 2602 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | || || || |||||| || || ||| | || || |||| | ||| || Sbjct 2601 AGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAGCGGATATTGTGC 2542 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | || | ||||| ||||| | ||||| || ||||||| ||| | |||| Sbjct 2541 ACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCA 2482 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 |||| || |||||| || || ||| | | ||| | || ||||| | |||||| Sbjct 2481 TAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGA 2422 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 |||||||| || ||||||| ||| ||||| ||||| | || ||| | ||||||| Sbjct 2421 AAAGGTGTTCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTACCCAAGAGACATA 2362 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 | || ||||||||||| | ||| | || |||||||||| | || ||| | | Sbjct 2361 TGGTCATATGTCTCCTTTACGCGCTCCATATCCTCACCGTGAATACCAAGAGCGACGCGC 2302 Query 156417 ATCCACATATGCTGAGGACGCTCTACAAT 156445 | |||| ||||| |||||||| |||| Sbjct 2301 AAAAACATTTGCTGCGGACGCTCCGCAAT 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471308084803403