Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20180 127 2e-23 seq15883 95.1 1e-13 >seq20180 Length=1155 Score = 127 bits (140), Expect = 2e-23 Identities = 216/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || | |||||| ||||| |||||||| ||||| ||| | |||||| | |||| Sbjct 371 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACTT 312 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||||||||| ||||||||||| ||| || || || || ||||| | Sbjct 311 GTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAA 252 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||| ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 251 AGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAGTCCG 192 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| ||| | || | ||||| | |||||||| | |||||| | |||| Sbjct 191 CCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCTGCTCTCGGCTTCCTTGT 132 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || ||| ||| | | ||||| ||| || |||| || | |||| || || || | Sbjct 131 ACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCACGTAACGGTCAGGATTCTCAC 72 Query 869931 GCAACAGGGGTTC 869943 |||| || ||||| Sbjct 71 GCAAAAGCGGTTC 59 >seq15883 Length=1215 Score = 95.1 bits (104), Expect = 1e-13 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736 |||||| | ||||| || ||| |||||||||| ||||||||||| ||| || || Sbjct 10 CACCTCCGGTACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCC 69 Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG 869796 || || ||||| || || ||||| ||||||||||||||| ||| | ||| | | Sbjct 70 ATCACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCAT 129 Query 869797 CGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGC 869856 | | |||||| | ||| ||| | || | ||||| | |||||||| | Sbjct 130 CTTCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCTGCT 189 Query 869857 CTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916 |||||| | |||||| ||| ||| | | ||||| ||| || |||| || | || Sbjct 190 CTCGGCTTCCTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCACGTAACG 249 Query 869917 GTTGGGGTTGTCGCGCAACAGGGGTTC 869943 || || || || ||||| || ||||| Sbjct 250 GTCAGGATTCTCACGCAAAAGCGGTTC 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104921894330023