Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq15901 107 2e-18 seq3911 107 2e-18 seq15897 105 6e-18 seq15893 104 2e-17 seq18697 98.7 9e-16 >seq15901 Length=812 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || |||||||| ||| | || || || || || || || || ||||||| || ||| Sbjct 242 GAAACCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAA 183 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 ||| |||||| | || | || || |||||||| ||||| || || || || || Sbjct 182 TCCAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCG 123 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||| || || || ||||||||||| | | | |||| Sbjct 122 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGAC 63 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 62 TACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 9 >seq3911 Length=608 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || ||||||||||| | || || || || || || || || ||||||| || ||| Sbjct 346 GAAACCATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAA 405 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 ||| |||||| | || | || || |||||||| ||||| || || || || || Sbjct 406 TCCAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCG 465 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||| || || || ||||||||||| | | | |||| Sbjct 466 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGAC 525 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 526 TACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGC 579 >seq15897 Length=564 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || ||||||||||| | || || || || || || || || ||||||| || ||| Sbjct 394 GAAACCATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAA 335 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 ||| |||||| | || | || || |||||||| ||||| || || || || || Sbjct 334 TCCAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCG 275 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||| || || || ||||||||||| | | | |||| Sbjct 274 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGAC 215 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || ||||| || || || ||| | ||| |||| ||||||| || Sbjct 214 TACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 162 >seq15893 Length=595 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || ||||||| || ||| ||| | Sbjct 585 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 526 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 525 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 466 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | |||| || ||| Sbjct 465 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 406 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| |||| ||||||| || Sbjct 405 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 359 >seq18697 Length=8154 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| || || || || || || || || |||||||||| || ||| | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | |||| || ||| Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 7607 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| |||| ||||||| || Sbjct 7608 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 7654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449745652709320