Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20180 185 1e-40 >seq20180 Length=1155 Score = 185 bits (204), Expect = 1e-40 Identities = 281/394 (71%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 || ||||||||||| || || || ||| ||||| || ||||| || ||| |||||||| Sbjct 227 TTTATCAAGCACGTGCTGGCGTTCTTT-GCCGCAAGTGATGGAATTGTGCTGGAGAACCT 285 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||| || || |||| || || ||| | || |||| || | || ||||||||||| Sbjct 286 GGCGCAGCGGTTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCA 345 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| || ||| | || || ||||| |||||| | ||| | || || ||| ||| Sbjct 346 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCAC 405 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCA--TCGACACGGTGCCGTCGGTGAGG 1456122 || ||| |||||||||| | | || | ||||| |||||| | |||| | | Sbjct 406 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACA--ATTCCGTGCATCCAG 463 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||| |||||||||| ||||||| | || || ||| |||||||| | Sbjct 464 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCCGAAC 518 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| || || || || || || || || ||| ||||| || | | Sbjct 519 GCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGT 578 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||| |||||||| || || |||||||| || Sbjct 579 TCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCT 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175205167789078